View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17519_low_7 (Length: 230)
Name: NF17519_low_7
Description: NF17519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17519_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 40289987 - 40289765
Alignment:
| Q |
8 |
ggtaaaagatatatacaaaatagaatgcaacttaaaattgcataatacaagaagcgtgaaattttgaatgcaacagaatatgtaacgtgtatgtacacaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40289987 |
ggtaaaagatatatacaaaatagaatgcaacttaaaattgcaaaatacaagaagcgtgaaattttgaatgcaacagaagatgtaacgtgtatgtacacaa |
40289888 |
T |
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| Q |
108 |
aaaacaaacagaaaaacttattattagttgtcctctttccttacaaaaaagtaaagataatcaaacacaattcaaattaatgcattctacattctttcaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40289887 |
aaaacaaacagaaaaacttattattagttgtcctctttccttacaaaaaagtaaagataatcaaacacaattcaaattaatgcattctacattctttcaa |
40289788 |
T |
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| Q |
208 |
gtctttgctaatgctaggtacct |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
40289787 |
gtctttgctaatgctaggtacct |
40289765 |
T |
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