View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17519_low_8 (Length: 214)

Name: NF17519_low_8
Description: NF17519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17519_low_8
NF17519_low_8
[»] chr4 (11 HSPs)
chr4 (1-99)||(3959176-3959274)
chr4 (97-195)||(3957774-3957872)
chr4 (103-192)||(4022830-4022919)
chr4 (102-192)||(3984753-3984843)
chr4 (103-192)||(4007672-4007761)
chr4 (108-195)||(3815439-3815526)
chr4 (102-189)||(3999874-3999961)
chr4 (97-161)||(3922352-3922416)
chr4 (106-162)||(3935711-3935767)
chr4 (103-192)||(3998681-3998770)
chr4 (106-148)||(3807848-3807890)
[»] chr8 (1 HSPs)
chr8 (3-99)||(19167925-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (44-99)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3959274 - 3959176
Alignment:
Q  1 tggacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959274 tggacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 3959176  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 3957872 - 3957774
Alignment:
Q  97 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatac 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3957872 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgtgaacatggtgggtcgtatatcatgcatac 3957774  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 4022830 - 4022919
Alignment:
Q  103 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgca 192  Q
    ||||||||| ||||||||||||||||||||| |||  || ||||||||||||||||||||| | ||| ||||| ||||||||||||||||    
T  4022830 tgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtagtgagaaaatggttggtcgtatatcatgca 4022919  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 3984753 - 3984843
Alignment:
Q  102 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgca 192  Q
    ||||||||||||||||||||||||||| |  ||||||  |||| |||||||| ||||||||| | ||||||||| ||||||||||||||||    
T  3984753 ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtagtgagaacatggttggtcgtatatcatgca 3984843  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 4007672 - 4007761
Alignment:
Q  103 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgca 192  Q
    ||||||||||||||||||||||||||||||||| || || |||||||  ||||||||||| || |||||| || |||||| |||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggtaccgagaacatcgttggtcgtgtatcatgca 4007761  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 3815439 - 3815526
Alignment:
Q  108 ttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgcatac 195  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |  |||||| || |||| | ||||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtacccagaacatcgttggtcctgtatcatgcatac 3815526  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 3999874 - 3999961
Alignment:
Q  102 ttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcat 189  Q
    |||||||||||| |||||||||||| |||||||| || ||||| ||||| |||||||||||  | ||| |||||||||||||||||||    
T  3999874 ttgtccttgctgcaaccttgattttgaaccttgtatgatttttcgctattctagttaggtactgagaaaatggtgggtcgtatatcat 3999961  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 3922416 - 3922352
Alignment:
Q  97 gggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggt 161  Q
    |||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  3922416 gggtattgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggt 3922352  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 3935767 - 3935711
Alignment:
Q  106 ccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggta 162  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3935711  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 3998681 - 3998770
Alignment:
Q  103 tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgcgaacatggtgggtcgtatatcatgca 192  Q
    |||||||||||||||||| |||||||||||||| || || |||||||  ||||||||||| || |||||| || ||| || |||||||||    
T  3998681 tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggtaccgagaacattgttggttgtgtatcatgca 3998770  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 3807848 - 3807890
Alignment:
Q  106 ccttgctgtaaccttgattttaaaccttgtctgcttttttgct 148  Q
    |||| |||||||||||||||||||||||| ||| |||||||||    
T  3807848 ccttactgtaaccttgattttaaaccttgcctgattttttgct 3807890  T

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Target: chr8 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 19167925 - 19168021
Alignment:
Q  3 gacacggctactgcccatgttgctagagatgaagaccaggtaaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 99  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  19167925 gacacggctattgcccatgttgctagatatgaagatcaggtaaacaatcctagtactgctgcaatgaagagtgttagcatattaagaactcaatggg 19168021  T

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Target: scaffold0060 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 18706 - 18761
Alignment:
Q  44 aaacaatcatagtactgctgcaatgaagagtgtaagcatattaagaactcaatggg 99  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  18706 aaacaatcctagtactgcttcaatgaagagtgtaagcatattaagaactcaatggg 18761  T

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