View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751R-Insertion-1 (Length: 792)
Name: NF1751R-Insertion-1
Description: NF1751R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751R-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 10540020 - 10539528
Alignment:
| Q |
9 |
gttgattctagtttgatttctgcaaccacccc-tgcaggcgtcaaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10540020 |
gttgattctagtttgatttctgcaaccaccccctgcagacgtgaaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgat |
10539921 |
T |
|
| Q |
108 |
gatatcaaggttgaggttgaagatgataatgttgttgtgataaccggcgagaggaagagggaagaaggtagctgcgtcaagtacctgatcatggagcaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
10539920 |
gatatcaaggttgaggttgaagatgataatgtggttgtgataaccggcgagaggaagagggaagaaggtggccgcgtcaagtacctgaacatggagcaaa |
10539821 |
T |
|
| Q |
208 |
gaagaaggtttggaaagttcaccggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgcttgtcaagatggtgtgcttactgttac |
307 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10539820 |
gaagaaggtttgggaagttcaccggaaggtttcttcttcctcaagatgctaatgctgaagctgtttcggctgcttgtcaagatggggtgtttactgttac |
10539721 |
T |
|
| Q |
308 |
tgcactcaagaaattgcctcctcctcagaaccctaacaagcctagaagaactattgaggtggttaagattgcttgaatgaaaccctattttgattagtga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10539720 |
tgcactcaagaaattgcctcctcctcagaaccctaacaagcatagaagaactattgaggtggttaagattgcttgaatgaaaccctattttgattagtga |
10539621 |
T |
|
| Q |
408 |
tgattttagttgctttgttttatgttttgggtaccattttaacaattaggtatttgattgatgcagaacaagttactgataattttgatttgt |
500 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10539620 |
tgattttagttgttttgttttatgttttgggtaccattttaacaattaggtatttgattgatgcagaacaagttactggtaattttgatttgt |
10539528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 525 - 792
Target Start/End: Complemental strand, 10539538 - 10539271
Alignment:
| Q |
525 |
ttttgatttgtgatgatatggtagttttatttgcattattaatatatctaacacttttattatgaaggcgtgtccaagtatctggcatgtatcgatgtct |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10539538 |
ttttgatttgtgatgatatggtagttttatttgcattattaatatatctaacacttttattatgaaggcgtgttcaagtatctggcatgtatcgatgtct |
10539439 |
T |
|
| Q |
625 |
atttttctaatagatgtgattataccatcacttttatcttttaaaatcattacatgtgtttatttgttcatatcgtgtttgcgttggtgcttcattcatg |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10539438 |
atttttctaatagatgtgattataccatcacttttatcttttaaaatcattacatgtgtttatttgttcatatcgtgtttgcgttggtgcttcattcatg |
10539339 |
T |
|
| Q |
725 |
ctatatcatggggttggtttgcgaataggatggagaaaaatccgggtgtgaaattttatgattgttgg |
792 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10539338 |
ctatatcatggggttggtttacagataggatggagaaaaatccgggtgtgaaattttatgattgttgg |
10539271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 10462105 - 10462462
Alignment:
| Q |
9 |
gttgattctagtttgatttctgcaaccacccctgcaggcgtcaaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatg |
108 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||| ||| |||||||| |||||||| | ||| ||||||||||| |||||||| ||||||||| || |
|
|
| T |
10462105 |
gttgattctagtttgatgactataaccacctctgcagacgtgaaggaataccaaaactcattcgtattcgagatggacttgccgggattgaaatctggtg |
10462204 |
T |
|
| Q |
109 |
atatcaaggttgaggttgaagatgataatgttgttgtgataaccggcgagaggaagagggaagaagg---tagctgcgtcaagtacctgatcatggagca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | || | ||||||||||| | ||||||||| |
|
|
| T |
10462205 |
atatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaagagggaagaaggaggtggcggagtcaagtacctaaacatggagca |
10462304 |
T |
|
| Q |
206 |
aagaagaaggtttggaaagttcaccggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgcttgtcaagatggtgtgcttactgtt |
305 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
10462305 |
gcgaagaatgtttgggaagttcagtggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgtt |
10462404 |
T |
|
| Q |
306 |
actgcactcaagaaattgcctcctcctcagaaccctaacaagcctagaagaactattg |
363 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10462405 |
actgctctcaagaaattgcctcctcctcagaaccctaacaagcctagaagaactattg |
10462462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 3745033 - 3744910
Alignment:
| Q |
51 |
aaggaatatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgttgttgtgataa |
150 |
Q |
| |
|
|||||| |||| || || |||||||||| ||| || ||||| ||| ||||||||| ||||| |||||| |||| ||||||||||| || ||||||||| |
|
|
| T |
3745033 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
3744934 |
T |
|
| Q |
151 |
ccggcgagaggaagagggaagaag |
174 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
3744933 |
gcggagagaggaagagggaagaag |
3744910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 3744841 - 3744752
Alignment:
| Q |
243 |
cttcctgagaatgctaatgctgatgctgtttcggctgcttgtcaagatggtgtgcttactgttactgcactcaagaaattgcctcctcctcag |
335 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||||||||||| || || | |||||||| | |||||||||||||||||||| |
|
|
| T |
3744841 |
cttcctgagaatgctaatactgatgctgtttctgctgtttgtcaagatggggttctgagtgttactg---ttcagaaattgcctcctcctcag |
3744752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 48303228 - 48303111
Alignment:
| Q |
57 |
tatcaaaactcgtacgtgttcgagatggatatgccgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgttgttgtgataaccggcg |
156 |
Q |
| |
|
|||| |||||| |||||||||| | |||| ||||| || ||||||||| ||| ||||||||| ||||||||||||| ||||| || |||||| ||| | |
|
|
| T |
48303228 |
tatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtg |
48303129 |
T |
|
| Q |
157 |
agaggaagagggaagaag |
174 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
48303128 |
aaaggaagagagaagaag |
48303111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University