View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751R-Insertion-13 (Length: 200)
Name: NF1751R-Insertion-13
Description: NF1751R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751R-Insertion-13 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 36961527 - 36961345
Alignment:
| Q |
19 |
taactccaggctttttcacttcttccttaggaatagttacagtgagaacaccattctcc-atgtttgcattcacttgatccatcttagcattctctgcca |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
36961527 |
taactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatccatcttagcattctctgcca |
36961428 |
T |
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| Q |
118 |
atctaaacttcctcatgaatttcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaacgcttctc |
200 |
Q |
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| T |
36961427 |
atctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttctc |
36961345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 35097959 - 35097805
Alignment:
| Q |
39 |
tcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatgaatt |
138 |
Q |
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| T |
35097959 |
tcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatt |
35097860 |
T |
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| Q |
139 |
tcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaac |
193 |
Q |
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| T |
35097859 |
tcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac |
35097805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 35098248 - 35098094
Alignment:
| Q |
39 |
tcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatgaatt |
138 |
Q |
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| T |
35098248 |
tcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatt |
35098149 |
T |
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| Q |
139 |
tcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaac |
193 |
Q |
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| T |
35098148 |
tcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac |
35098094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 36296493 - 36296651
Alignment:
| Q |
36 |
acttcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatga |
135 |
Q |
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| T |
36296493 |
acttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataa |
36296592 |
T |
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| Q |
136 |
atttcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaacg |
194 |
Q |
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| T |
36296593 |
actttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaacg |
36296651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 35107137 - 35106984
Alignment:
| Q |
39 |
tcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatgaatt |
138 |
Q |
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||||||||||| | ||| |||| |||||||||||||||||| || |||||||||||||| || |||||||||| ||||||||| |||||||||||| |
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| T |
35107137 |
tcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaatt |
35107038 |
T |
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| Q |
139 |
tcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaa |
192 |
Q |
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| T |
35107037 |
ttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa |
35106984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 35072720 - 35072876
Alignment:
| Q |
36 |
acttcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatga |
135 |
Q |
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| T |
35072720 |
acttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggttatctaaacctcctcatga |
35072819 |
T |
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| Q |
136 |
atttcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaa |
192 |
Q |
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| T |
35072820 |
attttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa |
35072876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 36940536 - 36940678
Alignment:
| Q |
57 |
acagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctcca |
156 |
Q |
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| T |
36940536 |
acagtgagaatgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctcca |
36940635 |
T |
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| Q |
157 |
cgcgatgccattcattgctcttatcttctttctcaacgcttct |
199 |
Q |
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| T |
36940636 |
cgggatgccattgatcgttcttatcttctttctcaacgcttct |
36940678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 24040766 - 24040934
Alignment:
| Q |
26 |
aggctttttcacttcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaac |
125 |
Q |
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|||||| || |||||||||||||| | ||| |||||||||| |||||||||||| || |||||||||||||| || |||||||||| ||||||||| |
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| T |
24040766 |
aggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaac |
24040865 |
T |
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| Q |
126 |
ttcctcatgaatttcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaacg |
194 |
Q |
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||||||||||||| ||||||||| ||||||| |||||||||| || ||||||||||||| |||||| |
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| T |
24040866 |
ctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg |
24040934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 24014219 - 24014376
Alignment:
| Q |
36 |
acttcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatga |
135 |
Q |
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| T |
24014219 |
acttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattttcgggcaacctgaatctcctcatga |
24014318 |
T |
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| Q |
136 |
atttcccactgctaagctccacgcgatgccattcattgctcttatcttctttctcaac |
193 |
Q |
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| || || ||||| ||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
24014319 |
actttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaac |
24014376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 34919237 - 34919131
Alignment:
| Q |
37 |
cttcttccttaggaatagttacagtgagaacaccattctccatgtttgcattcacttgatccatcttagcattctctgccaatctaaacttcctcatgaa |
136 |
Q |
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||||||||||||||| ||| ||||| ||||| ||||||||||| || || || |||||||| ||| ||||||| | ||| |||||| ||||||| || |
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| T |
34919237 |
cttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcataaa |
34919138 |
T |
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| Q |
137 |
tttccca |
143 |
Q |
| |
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|||||| |
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| T |
34919137 |
cttccca |
34919131 |
T |
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