View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751R-Insertion-4 (Length: 673)

Name: NF1751R-Insertion-4
Description: NF1751R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751R-Insertion-4
NF1751R-Insertion-4
[»] chr1 (5 HSPs)
chr1 (9-673)||(13257545-13258205)
chr1 (526-578)||(20816884-20816936)
chr1 (528-578)||(34488630-34488680)
chr1 (525-578)||(34497689-34497743)
chr1 (536-578)||(36754877-36754919)
[»] chr3 (1 HSPs)
chr3 (523-578)||(23528336-23528391)
[»] chr8 (4 HSPs)
chr8 (528-578)||(22881768-22881818)
chr8 (530-578)||(15610280-15610328)
chr8 (528-578)||(19342153-19342203)
chr8 (528-578)||(19371651-19371701)
[»] chr5 (3 HSPs)
chr5 (530-578)||(11848260-11848308)
chr5 (526-578)||(24558949-24559001)
chr5 (526-578)||(24599981-24600033)
[»] chr2 (3 HSPs)
chr2 (525-578)||(35511817-35511870)
chr2 (500-578)||(16748022-16748100)
chr2 (528-578)||(24386406-24386456)
[»] chr7 (4 HSPs)
chr7 (546-578)||(32561885-32561917)
chr7 (546-578)||(32562258-32562290)
chr7 (527-578)||(7681499-7681550)
chr7 (525-578)||(11739518-11739571)
[»] chr4 (1 HSPs)
chr4 (536-578)||(35150106-35150148)
[»] chr6 (1 HSPs)
chr6 (529-578)||(14761333-14761382)


Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 9 - 673
Target Start/End: Original strand, 13257545 - 13258205
Alignment:
Q  9 atatggatccggtagacctcagaagcaacccaagcatgcatcttcctcaacaacttgatgagatttaagaaatttatcagtttctagttgtgtcaaaaga 108  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13257545 atatggatccggtggacctcagaagcaatccaagcatgcatcttcctcaacaagttgatgagatttaagaaatttatcagtttctagttgtgtcagaaga 13257644  T
Q  109 tgtgtcattgttgcccttaatagcataaaaccttttcataattcctcctacatcttctgagtttgtatctcttgctgagtttcaagaatgaaaccaggag 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13257645 tgtgtcattggtgcccttaatagcataaaaccttttcataattcctcctacatcatctgagtttgtatctcttgctgagtttcaagaatgaaaccaggag 13257744  T
Q  209 tgaactaccttatcaaagcgttgcgcaagttaagatgcatgattatttttcaacatttttgcttgtaattgaatatttttctttgtatcttatcaacata 308  Q
    ||||||  |||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13257745 tgaactgacttatcaaa-----gcgcaagttaagatgcatgattatttttcaacatttttgcttgtaattgaatatttttctttgtatcttatcaatata 13257839  T
Q  309 agtttactttgctaaaaattgtataccatgcagaatcttaacttaattgcttcttagtgcttaaattttttattatataattattttgtcat-agttagc 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  13257840 agtttactttgctaaaaattgtatactatgcagaatcttaacttaattgcttcttagtgcttaaattttttattatataattacgttgtcataagttagc 13257939  T
Q  408 cttgcttagactcnnnnnnnagttcacaaacatcgccctctgatgagttaagttaattaacaaattaaaggcagttattctttaaaatattaaagtttgt 507  Q
    || ||||||||||       ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13257940 ctcgcttagactc-ggggggagttcaccaacatcaccctctgatgagttaagttaattaacaaattaaaggcagttattctttaaaatatttaagtctgt 13258038  T
Q  508 tgtcat-aaaaaacgggagattgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataagcaaaaaccttcatagacattattttaa 606  Q
    | |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||| | |||||||||| |||    
T  13258039 tatcataaaaaaacgggagattgttgaaccaaagtggactttagaacaatgtctctagagttttgatgataagcaaaaaccttaagagacattattctaa 13258138  T
Q  607 aactcactttggctcaacatcataagcaaacacctcaagtattaattgttactaggaacttgaatgc 673  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  13258139 aactcactttggctcaacctcataagcaaacacctcaagtattaatcgttactaggaatttgaatgc 13258205  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 20816884 - 20816936
Alignment:
Q  526 attgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||  |||||||| ||||||||||||||||||| ||||| |||||||    
T  20816884 attgttgaactaaagtgggttttagaacaatgtctctaatgttttaatgataa 20816936  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 34488680 - 34488630
Alignment:
Q  528 tgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||| ||||||||||| ||||||||||||| ||||  |||||||||||||    
T  34488680 tgttggatcaaagtgggttttagaacaatgtatctagagttttgatgataa 34488630  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 578
Target Start/End: Complemental strand, 34497743 - 34497689
Alignment:
Q  525 gattgttgaatcaaagtgggctttagaacaatgtctctaagg-ttttgatgataa 578  Q
    ||||||||||||||  |||| ||||||||||| ||||||||| ||||||||||||    
T  34497743 gattgttgaatcaagatgggttttagaacaatatctctaaggtttttgatgataa 34497689  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 578
Target Start/End: Original strand, 36754877 - 36754919
Alignment:
Q  536 caaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||    
T  36754877 caaagtgggttttagaacaatatctctaaagttttgatgataa 36754919  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 578
Target Start/End: Original strand, 23528336 - 23528391
Alignment:
Q  523 gagattgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||    
T  23528336 gagattgttgaaccaaagtgagttttagaacaatgtctctaaggttttgatgataa 23528391  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 22881818 - 22881768
Alignment:
Q  528 tgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||||||||    
T  22881818 tgttgaaccaaagtgagttttagaacaatgtctctaaggttttgatgataa 22881768  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 15610328 - 15610280
Alignment:
Q  530 ttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  15610328 ttgaatcaaagtgggttttagaacaatgtctataaggttttgataataa 15610280  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 19342153 - 19342203
Alignment:
Q  528 tgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||| ||||||| | ||||||||||||||||||| |||||||||||||    
T  19342153 tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataa 19342203  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 19371651 - 19371701
Alignment:
Q  528 tgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||| ||||||| | ||||||||||||||||||| |||||||||||||    
T  19371651 tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataa 19371701  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 11848260 - 11848308
Alignment:
Q  530 ttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  11848260 ttgaaccaaagtgggttttacaacaatgtctctaaggttttgatgataa 11848308  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 24558949 - 24559001
Alignment:
Q  526 attgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||| || ||||||||| ||||||||||||||| |||||||||||||||||    
T  24558949 attgtttaaccaaagtgggttttagaacaatgtctttaaggttttgatgataa 24559001  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 24599981 - 24600033
Alignment:
Q  526 attgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||| || ||||||||| ||||||||||||||| |||||||||||||||||    
T  24599981 attgtttaaccaaagtgggttttagaacaatgtctttaaggttttgatgataa 24600033  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 578
Target Start/End: Original strand, 35511817 - 35511870
Alignment:
Q  525 gattgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||||||||||| | ||||||||||||| | ||| |||||||||||||    
T  35511817 gattgttgaatcaaagtgagttttagaacaatgtttttaatgttttgatgataa 35511870  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 16748022 - 16748100
Alignment:
Q  500 aagtttgttgtcataaaaaacg-ggagattgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||||| |||||||||| | ||| |||| |||| |||| |||| ||||||||||||| |||||| ||||||||||||    
T  16748022 aagtttgttatcataaaaaaggaggaaattgatgaaccaaa-tgggttttagaacaatgtttctaagattttgatgataa 16748100  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 24386456 - 24386406
Alignment:
Q  528 tgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||| ||||||||| ||||||||||| || |||||||||| |||||||    
T  24386456 tgttgaaccaaagtgggttttagaacaatatccctaaggtttttatgataa 24386406  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 32561885 - 32561917
Alignment:
Q  546 tttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||||||||||||||||||||||||||    
T  32561885 tttagaacaatgtctctaaggttttgatgataa 32561917  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 32562258 - 32562290
Alignment:
Q  546 tttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||||||||||||||||||||||||||    
T  32562258 tttagaacaatgtctctaaggttttgatgataa 32562290  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 578
Target Start/End: Original strand, 7681499 - 7681550
Alignment:
Q  527 ttgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||| |||  |||| ||||||||||| |||||||||||||||||||||    
T  7681499 ttgttgaaccaagatgggttttagaacaatatctctaaggttttgatgataa 7681550  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 578
Target Start/End: Original strand, 11739518 - 11739571
Alignment:
Q  525 gattgttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||||||| ||||  ||| ||||||||||||| ||||| |||||||||||||    
T  11739518 gattgttgaaccaaaaagggttttagaacaatgtttctaatgttttgatgataa 11739571  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 578
Target Start/End: Original strand, 35150106 - 35150148
Alignment:
Q  536 caaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  35150106 caaagtgagttttagaacaatgtctctaaagttttgatgataa 35150148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 578
Target Start/End: Complemental strand, 14761382 - 14761333
Alignment:
Q  529 gttgaatcaaagtgggctttagaacaatgtctctaaggttttgatgataa 578  Q
    |||||| || |||||| |||||||||||||||||||  ||||||||||||    
T  14761382 gttgaaccatagtgggttttagaacaatgtctctaaaattttgatgataa 14761333  T

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