View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751R-Insertion-5 (Length: 584)
Name: NF1751R-Insertion-5
Description: NF1751R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751R-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Original strand, 41596992 - 41597554
Alignment:
| Q |
9 |
aatagttctagttctaatgagttaaagcctctttcacctgatacaccagtttctggtggtgattctggttttaattcagtgaagtctcaatttattgttc |
108 |
Q |
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| T |
41596992 |
aatagttctagttctaatgagttaaagcctctttcacctgatacaccagtttctggtggtgattctggttttaattcagtgaagtctcaatttattgttc |
41597091 |
T |
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| Q |
109 |
caaatcatggtttgaatttgagtaatagtaatattagtgatggtgtttttgatttgaattcttctgagactagggttatggctcaaaatatttttagtga |
208 |
Q |
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| T |
41597092 |
caaatcatggtttgaatttgagtaatagtaatattagtgatggtgtttttgatttggattcttctgagactagggttatggctcaaaatatttttagtga |
41597191 |
T |
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| Q |
209 |
tgctgattctattttgcagtttagaaaagggttagaggaagctagcaagtttcttccacaaaaagctcagctttttactggttttcagaatgctagtgat |
308 |
Q |
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| T |
41597192 |
tgctgattctattttgcagtttagaaaagggttagaggaagctagcaagtttcttccacaaaaagctcagctttttactggttttcagaatgctagtgat |
41597291 |
T |
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| Q |
309 |
agtttagtgtctcatgagcctaagggtagggttggagtgatcaagatggagggtggtgttagggagaactcgaattcgagttattcgagttcaaatttga |
408 |
Q |
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| T |
41597292 |
agtttagtgtctcatgagcctaagggtagggttggagtgatcaagatggagggtggtgttagggagaactcgaattcgagttattcgagttcaaatttga |
41597391 |
T |
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| Q |
409 |
attctggttattcgagttcaaattcgaattcacatggtttgttgaagagtagaaagaatcacgagcgtcaagaaagtgacggtgaagaaggaagaagtaa |
508 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
41597392 |
attcgggttattcgagttcaaattcgaattcacatggtttgttgaagagtagaaagaatcacgagcgtcaagaaagtgacgatgaagaaggaagaattaa |
41597491 |
T |
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| Q |
509 |
caagcagtctgcggtttctgttgaggagagtgaaatatctgatatgtttgatagggttttact |
571 |
Q |
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| T |
41597492 |
caagcagtctgcggtttccgttgaggagagtgaaatatctgatatgtttgatagagttttact |
41597554 |
T |
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