View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1751R-Insertion-6 (Length: 483)
Name: NF1751R-Insertion-6
Description: NF1751R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751R-Insertion-6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 266 - 480
Target Start/End: Original strand, 39059395 - 39059613
Alignment:
| Q |
266 |
acaatcattttagaca-tttttgttagagaggtgctatatcaagcgaaaaatacatcccgaatgaatcacga---ttatgataaccaattgaatttgttt |
361 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||| |
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| T |
39059395 |
acaatcattttagacaatttttgttagagaggtgctatatcaagcgaaaaatacatcctaaatgaatcacgagaattacgataaccaattgaatttattt |
39059494 |
T |
|
| Q |
362 |
atggacggaaaacacgctgagtggagtgctaagttagcttcaaacattatgtcacgtgctttctgaataattttgcagtctaatttgtctctataaatat |
461 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
39059495 |
atgggcggaaaacacgctgaatggggtgctaagttggcttcaaacatcatgtcacatgctttctgaataatttcactgtctaatttgtctctataaatat |
39059594 |
T |
|
| Q |
462 |
attttccctcttgttaatt |
480 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
39059595 |
cttttcccttttgttaatt |
39059613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 39059126 - 39059351
Alignment:
| Q |
8 |
actccctccgtcctacaatatttgccatatatgtctattttacataaattaaa------------------gaaagaaaatggtgattttgtccaattat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
39059126 |
actccctccgtcctacaatatttgccatatatgtctattttacacaaattaaaaaaatatgataaatgaaagaaagaaaatggtgattttgtccaattat |
39059225 |
T |
|
| Q |
90 |
ccatattaactactgnnnnnnnnnnnnnnngtattatatatgaaaattgaaaaataataacnnnnnnnnnnnnnngaataaagtgaaaaataataactta |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39059226 |
ccatattaactactgtttttttt-------gtattatatatgaaaattgaaaaataataactttttcctttttttgaataaagtgaaaaataataactta |
39059318 |
T |
|
| Q |
190 |
aaagtgatacacacaacattaatgagaggatac |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
39059319 |
aaagtgatacacacaacattaattagaggatac |
39059351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 466
Target Start/End: Complemental strand, 19401773 - 19401664
Alignment:
| Q |
360 |
ttatggacggaaaacacgctgagtggagtgctaa---gttagcttcaaacattatgtcacgtgctttctgaataattttgcagtctaatttgtctctata |
456 |
Q |
| |
|
|||||| ||||||||| |||| |||| ||||||| ||| ||||||||||||||| ||||||||||| | || |||| | |||||||||||| ||||| |
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| T |
19401773 |
ttatgggcggaaaacatgctgggtggggtgctaataagttggcttcaaacattatgccacgtgctttccggatgatttctctgtctaatttgtcactata |
19401674 |
T |
|
| Q |
457 |
aatatatttt |
466 |
Q |
| |
|
||||| |||| |
|
|
| T |
19401673 |
aatatctttt |
19401664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 32945071 - 32945037
Alignment:
| Q |
168 |
taaagtgaaaaataataacttaaaagtgatacaca |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32945071 |
taaagtgaaaaataataacttcaaagtgatacaca |
32945037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 470
Target Start/End: Complemental strand, 45890544 - 45890364
Alignment:
| Q |
292 |
agaggtgctatatcaagcgaaaaatacatcccgaatgaatcacgattatg--ataaccaattgaatttgtttatggacggaaaacacgctgagtggagtg |
389 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || ||||||||| || ||||||||||||| ||||||||||||||||| | | || |||| || |
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|
| T |
45890544 |
agagttgctatatcaagcgaaaaatacaaccttaaggaatcacgagaattgcataaccaattgaaaatgtttatggacggaaaatatgttgggtggggta |
45890445 |
T |
|
| Q |
390 |
ctaagttagcttcaaacattatgtcacgtgctttctgaataattttgcagtctaatttgtctctataaatatattttccct |
470 |
Q |
| |
|
|||| || |||||| |||||||| ||||| || || | || |||| || |||||||||| |||||||||| |||||||| |
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|
| T |
45890444 |
ctaatttggcttcagacattatgccacgtactctcgggatgatttcgcgtactaatttgtccctataaatatcttttccct |
45890364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 405
Target Start/End: Original strand, 25579427 - 25579542
Alignment:
| Q |
292 |
agaggtgctatatcaagcgaaaaatacatcccgaatgaatcacg---attatgataaccaattgaatttgtttatggacggaaaacacgctgagtggagt |
388 |
Q |
| |
|
|||| ||||||||||| | ||||||||| || ||| |||||||| ||| | |||||||| ||||||||||||||||||||||||| | |||||| || |
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|
| T |
25579427 |
agagctgctatatcaaacaaaaaatacaacctgaaggaatcacgcgaattgt-ataaccaaatgaatttgtttatggacggaaaacatgtagagtggggt |
25579525 |
T |
|
| Q |
389 |
gctaagttagcttcaaa |
405 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
25579526 |
gctaagttggcttcaaa |
25579542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 31297116 - 31297032
Alignment:
| Q |
340 |
tgataaccaattgaatttgtttatggacggaaaacacgctgagtggagtgctaagttagcttcaaacattatgtcacgtgctttc |
424 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||||||||||| || ||| ||||||||| ||||||||||||||| ||| ||||||| |
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|
| T |
31297116 |
tgatagccaatagaatttgtatatgggcggaaaacacggtgggtgtgatgctaagttggcttcaaacattatgccacatgctttc |
31297032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 26787705 - 26787835
Alignment:
| Q |
297 |
tgctatatcaagcgaaaaatacatcccgaatgaatcacgattat---gataaccaattgaatttgtttatggacggaaaacacgctgagtggagtgctaa |
393 |
Q |
| |
|
||||||||| || ||||| | |||| |||||||||||||| || || | ||||||||||||||| ||| ||||||||| |||| ||| |||||| |
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|
| T |
26787705 |
tgctatatccagtgaaaattgcatcgcgaatgaatcacgagaattgcgacagccaattgaatttgttcatgagcggaaaacatgctggttgggctgctaa |
26787804 |
T |
|
| Q |
394 |
gttagcttcaaacattatgtcacgtgctttc |
424 |
Q |
| |
|
||||| ||||||||| || ||||||||||| |
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|
| T |
26787805 |
attagcatcaaacattttgccacgtgctttc |
26787835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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