View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751_high_1 (Length: 438)

Name: NF1751_high_1
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751_high_1
NF1751_high_1
[»] chr1 (3 HSPs)
chr1 (43-124)||(46902040-46902121)
chr1 (117-207)||(46901929-46902019)
chr1 (221-271)||(46901663-46901713)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 46902121 - 46902040
Alignment:
Q  43 atggagtgggattggctgggatcaatttggtttgcttctccttttggaatcaccttccaatacatgagtctaaaaacatgag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46902121 atggagtgggattggctgggatcaatttggtttgcttctccttttggaatcaccttccaatacatgagtctaaaaacatgag 46902040  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 46902019 - 46901929
Alignment:
Q  117 aacatgaggtatggttgcgtttagttccagcagcagaacaataatatctgcatgggagcgattgttcaagatttgcttgatgaatttattt 207  Q
    |||| ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46902019 aacaggaggtatggttgcatttagttccagcacaagaacaataatatctgcatgggagcgattgttcaagatttgcttgatgaatttattt 46901929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 46901713 - 46901663
Alignment:
Q  221 tatagatataattgacaagtgaaaaccattttcaattaagagcacaacata 271  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46901713 tatagatataattgacaagtgaaaaccattttcaatcaagagcacaacata 46901663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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