View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751_low_10 (Length: 247)
Name: NF1751_low_10
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29204563 - 29204789
Alignment:
| Q |
1 |
tgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204563 |
tgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattca |
29204662 |
T |
|
| Q |
101 |
ttacttcatttatgaagttgatgttcgttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204663 |
ttacttcatttatgaagttgatgttcgttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaa |
29204762 |
T |
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| Q |
201 |
aatctgtatttggttatggagtactta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29204763 |
aatctgtatttggttatggagtactta |
29204789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 12647313 - 12647087
Alignment:
| Q |
1 |
tgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12647313 |
tgattcgtaaaaatgcagttgaaggtattttggctgagcgagacattcttatatctgttcgaaatccttttgtggtaagcaggccataccatgtcattca |
12647214 |
T |
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| Q |
101 |
ttacttcatttatgaagttgatgttcgttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647213 |
ttacttcatttatgaagttgatgttcgttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaa |
12647114 |
T |
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| Q |
201 |
aatctgtatttggttatggagtactta |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12647113 |
aatctgtatttggttatggagtactta |
12647087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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