View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751_low_11 (Length: 239)

Name: NF1751_low_11
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751_low_11
NF1751_low_11
[»] chr7 (3 HSPs)
chr7 (1-96)||(22592216-22592311)
chr7 (187-231)||(46553353-46553397)
chr7 (176-221)||(32548550-32548595)
[»] chr1 (3 HSPs)
chr1 (36-128)||(31147305-31147400)
chr1 (181-225)||(38931436-38931480)
chr1 (126-164)||(31147596-31147634)
[»] chr8 (1 HSPs)
chr8 (181-225)||(37562417-37562461)
[»] chr3 (1 HSPs)
chr3 (181-225)||(51421557-51421601)
[»] chr4 (1 HSPs)
chr4 (168-219)||(43079861-43079912)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22592311 - 22592216
Alignment:
Q  1 ttagtaatatgtggatcaaatttcagaagcttttaagtgtggcaagacaccaatcgaccaagttcaaagttaccaggtacagtgaaagcttcttgc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22592311 ttagtaatatgtggatcaaatttcagaagcttttaagtgtggcaagacaccaatcgaccaagttcaaagttaccaagtacagtgaaagcttcttgc 22592216  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 46553353 - 46553397
Alignment:
Q  187 ttgccggtggtgggttggtggggatgaaggagagagatgatgatg 231  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
T  46553353 ttgctggtggtgggttggtggggatgagggagagagatgatgatg 46553397  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 32548550 - 32548595
Alignment:
Q  176 ttttgatggtattgccggtggtgggttggtggggatgaaggagaga 221  Q
    |||||||||| |||| |||||||||||||| || ||||||||||||    
T  32548550 ttttgatggtgttgctggtggtgggttggttggtatgaaggagaga 32548595  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 31147305 - 31147400
Alignment:
Q  36 agtgtggcaagacaccaatcgaccaagttc-aaagttaccaggtacagtgaaagcttcttgccaccaaagtctg--caaactatttctgcttctta 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  31147305 agtgtggcaagacaccaatcgaccaagttctaaagttaccaggtacagtgaaagcttcttgccaccaaagtctgcacaaactatttctggttctta 31147400  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 38931480 - 38931436
Alignment:
Q  181 atggtattgccggtggtgggttggtggggatgaaggagagagatg 225  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  38931480 atggtgttgctggtggtgggttggtggggatgaaggagagagatg 38931436  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 31147596 - 31147634
Alignment:
Q  126 ttagttggagtatgtaattttaataggttcacttccttg 164  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  31147596 ttagctggattatgtaattttaataggttcacttccttg 31147634  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 37562461 - 37562417
Alignment:
Q  181 atggtattgccggtggtgggttggtggggatgaaggagagagatg 225  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  37562461 atggtgttgctggtggtgggttggtggggatgaaggagagagatg 37562417  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 51421557 - 51421601
Alignment:
Q  181 atggtattgccggtggtgggttggtggggatgaaggagagagatg 225  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  51421557 atggtgttgctggtggtgggttggtggggatgaaggagagagatg 51421601  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 43079861 - 43079912
Alignment:
Q  168 gactatggttttgatggtattgccggtggtgggttggtggggatgaaggaga 219  Q
    |||| ||||||||||||| |||  ||||||||||||||||||||||||||||    
T  43079861 gactgtggttttgatggtgttggtggtggtgggttggtggggatgaaggaga 43079912  T

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