View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751_low_13 (Length: 236)
Name: NF1751_low_13
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 29204430 - 29204228
Alignment:
| Q |
16 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204430 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
29204331 |
T |
|
| Q |
116 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204330 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
29204231 |
T |
|
| Q |
216 |
aac |
218 |
Q |
| |
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||| |
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| T |
29204230 |
aac |
29204228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 12647446 - 12647648
Alignment:
| Q |
16 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12647446 |
ataatactagttttattttacaacttcaggaatggatacatgctttttgtatgcactgtttaataacatagtttgctaaatcaatctctctagctttgtt |
12647545 |
T |
|
| Q |
116 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647546 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
12647645 |
T |
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| Q |
216 |
aac |
218 |
Q |
| |
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||| |
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|
| T |
12647646 |
aac |
12647648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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