View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751_low_15 (Length: 219)
Name: NF1751_low_15
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751_low_15 |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 6325722 - 6325924
Alignment:
| Q |
17 |
atccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataacca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325722 |
atccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataacca |
6325821 |
T |
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| Q |
117 |
ttaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||| | || ||| ||||||||||| |
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| T |
6325822 |
ttaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaa |
6325921 |
T |
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| Q |
217 |
agc |
219 |
Q |
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||| |
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| T |
6325922 |
agc |
6325924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 6333203 - 6333401
Alignment:
| Q |
21 |
attgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaa |
120 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||| || ||||| | ||| || |
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| T |
6333203 |
attgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattatcatcaa |
6333302 |
T |
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| Q |
121 |
agctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagc |
219 |
Q |
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| T |
6333303 |
agctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaaaatgcaacaatgtcacaagcaccaaagc |
6333401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 6242948 - 6242756
Alignment:
| Q |
17 |
atccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataacca |
116 |
Q |
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||||||||| ||||||| ||| | |||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
6242948 |
atccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaattgtcggcgaaat----- |
6242854 |
T |
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| Q |
117 |
ttaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaa |
216 |
Q |
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| T |
6242853 |
-----gctaaaattgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaa |
6242759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 6346321 - 6346516
Alignment:
| Q |
22 |
ttgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaa |
121 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||||||| |||||||| || |||||| ||||||| |||||||| || ||||| | ||| ||| |
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| T |
6346321 |
ttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaaaaaatccaagcaattgtaggagaaatcatcatcaaa |
6346420 |
T |
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| Q |
122 |
gctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaa |
217 |
Q |
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|||| || ||||||||||||||||||||||| ||| | |||| || | |||||||| | |||||||||| || | || |||||||||||||||| |
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| T |
6346421 |
gctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagctgtagcattgtcacaagcaccaaa |
6346516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 6219765 - 6219594
Alignment:
| Q |
46 |
atagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttcca |
145 |
Q |
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|||||||||||||| ||||| |||||||| || | |||| ||||||| |||||||| || ||||| | ||| ||||||| || |||||||||||||||| |
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| T |
6219765 |
atagcacatcaaagaaaagagtaagatccacaagcacaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttcca |
6219666 |
T |
|
| Q |
146 |
agtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaa |
217 |
Q |
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||||||| ||| | |||| || | |||||||| || |||||||||| || |||| ||| | |||||||||| |
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| T |
6219665 |
agtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctgtaacattgtaataagcaccaaa |
6219594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 6219275 - 6219151
Alignment:
| Q |
22 |
ttgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaa |
121 |
Q |
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|||||||||||| ||| | | ||||||| |||||||| ||| || |||||| | | || |||| |||||| ||||| || || |||||| ||| ||| |
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| T |
6219275 |
ttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaatcaatccaagcaatggtaggggaaatattcatcaaa |
6219176 |
T |
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| Q |
122 |
gctaaaattgaaacaacacttccaa |
146 |
Q |
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|||||||| ||||||||||||||| |
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| T |
6219175 |
gctaaaataaaaacaacacttccaa |
6219151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 1106 - 992
Alignment:
| Q |
77 |
aaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaagga |
176 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| || | || |||| |
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| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga |
1007 |
T |
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| Q |
177 |
aactattgatgtgaa |
191 |
Q |
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||||||||||||||| |
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| T |
1006 |
aactattgatgtgaa |
992 |
T |
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