View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1751_low_3 (Length: 431)
Name: NF1751_low_3
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1751_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 125 - 411
Target Start/End: Original strand, 6351108 - 6351394
Alignment:
| Q |
125 |
aaatcaagataaccaggccagcaagaacggggataactaatctatttattagaaaggcagcagtatcgaaagcaagaaccccggaatacaagaagcaagg |
224 |
Q |
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| T |
6351108 |
aaatcaagataaccaggccagcaagaaaggggataactaatctatttattagaaaggcagcagtatcgaaagcaagaaccccggcatacaagaagcaagg |
6351207 |
T |
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| Q |
225 |
caggtgagcataaagataagtgttggtatttagtctctctctgtaactatatttttgttatgttttttcagagctgaatgtgatctaaatttttaattct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351208 |
caggtgagcataaagataagtgttggtatttagtctctctctgtaactatatttttgttatgttttttcagagctgaatgtgatctaaatttttaattct |
6351307 |
T |
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| Q |
325 |
tctcaaatgataatatttttaaattgtatattcaaagagcaggtaatgttcgaccagtctcaactctcaactatctgcatttgtttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6351308 |
tctcaaatgataatatttttaaattgtatattcaaagagcaagtaatgttcgaccagtctcaactctcaactatctgcctttgtttc |
6351394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6350882 - 6350963
Alignment:
| Q |
1 |
tcttctattctcttcatttctctctgttttactttctta---atagtaacaaacacagtgttaataccaactactcattgag |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6350882 |
tcttctattctcttcatttctctctgttttactttcttattaatagtaacaaacacagtgttaataccaactactcattgag |
6350963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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