View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1751_low_6 (Length: 284)

Name: NF1751_low_6
Description: NF1751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1751_low_6
NF1751_low_6
[»] chr3 (3 HSPs)
chr3 (190-269)||(37221194-37221273)
chr3 (71-140)||(37221320-37221389)
chr3 (19-52)||(37221389-37221422)
[»] chr2 (1 HSPs)
chr2 (198-268)||(37572190-37572260)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 37221273 - 37221194
Alignment:
Q  190 cttttctatgataattttctgagcaaagagaattgttccatggagaaaacacagtaaccgcgttcacaaagctttgtttt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  37221273 cttttctatgataattttctgagcaaagagaattgttccatggagaaaacacaataacattgttcacaaagctttgtttt 37221194  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 37221389 - 37221320
Alignment:
Q  71 acccatctggaaaaaacttgaacacaaaacgaaacgacgtcgttttgtttgttactcttcaatgaaataa 140  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37221389 acccatttgaaaaaaacttgaacacaaaacgaaacggcgtcgttttgtttgttactcttcaatgaaataa 37221320  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 37221422 - 37221389
Alignment:
Q  19 atctatccctcccacgcccagattcgtggcaaaa 52  Q
    ||||||||||||||||||||||||||||||||||    
T  37221422 atctatccctcccacgcccagattcgtggcaaaa 37221389  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 37572190 - 37572260
Alignment:
Q  198 tgataattttctgagcaaagagaattgttccatggagaaaacacagtaaccgcgttcacaaagctttgttt 268  Q
    |||||||||  | |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37572190 tgataatttcttcagcagagagaattgttccatggagaaaacacagtaacctcgttcacaaagctttgttt 37572260  T

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