View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17520_high_10 (Length: 366)
Name: NF17520_high_10
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 44975192 - 44975541
Alignment:
| Q |
1 |
ctttgtagttcttggctatcttttgcttactttgttttggttatttgggtcatagttcttatggcaaactcatttgttctgttcttgagttctttagcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975192 |
ctttgtagttcttggctatcttttgcttactttgttttggttatttgggtcatagttcttatggcaaactcatttgttctgttcttgagttctttagcac |
44975291 |
T |
|
| Q |
101 |
caaactacattgccggaacttcactcatgacagtgctacttgcagcattttttctgttctctggatactttatatctaaggattgtttacctaagtattg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975292 |
caaactacattgctggaacttcactcatgacagtgctacttgcagcattttttctgttctctggatactttatatctaaggattgtttacctaagtattg |
44975391 |
T |
|
| Q |
201 |
gctcttcatgcacttcttttctatgtacaaatatgctcttgatgcacttcttatcaatgagtattcttgcttagctacaaggtgcatgatatggtttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975392 |
gctcttcatgcacttcttttctatgtacaaatatgctcttgatgcacttcttatcaatgagtattcttgcttagctacaaggtgcatgatatggtttcaa |
44975491 |
T |
|
| Q |
301 |
gagaatgatcaagaatgcatgatcactggtggtgacgtgttgcagaagag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975492 |
gagaatgatcaagaatgcatgatcactggtggtgacgtgttgcagaagag |
44975541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University