View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_high_11 (Length: 337)
Name: NF17520_high_11
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 8159203 - 8159363
Alignment:
| Q |
84 |
cttttaaaaaggttacgttcaggtctaacaataagaagttaaattaatgccttgaatgttttgaccagttatacattaactttacaaaacctagctcaac |
183 |
Q |
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| T |
8159203 |
cttttaaaaaggttacgtttaggtctaacaataagaagttaaatttatgctttgaatgttttgaccagttataca---actttacaaaacctagctcaac |
8159299 |
T |
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| Q |
184 |
ccaatatatattcatctttggagctacatttggttggacacaaacataaatcttttatatttag |
247 |
Q |
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| T |
8159300 |
ccaatatatatccatctttggagctacatttggttggacacagacataaatcttttatatttag |
8159363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8158887 - 8158941
Alignment:
| Q |
1 |
tagtctatttaaatatgcgtcatattaattatttaataagaaatgaatatttaga |
55 |
Q |
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| T |
8158887 |
tagtctatttaaatatgcgtcatattaattatttaataagaaatgaatatttaga |
8158941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 27900068 - 27900012
Alignment:
| Q |
204 |
gagctacatttggttggacacaaacataaatcttttatatttaggcacacgcccatt |
260 |
Q |
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| T |
27900068 |
gagctacacttggttggacacaaacatagaacttttatatttaggcacacgctcatt |
27900012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 41827874 - 41827913
Alignment:
| Q |
214 |
tggttggacacaaacataaatcttttatatttaggcacac |
253 |
Q |
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| T |
41827874 |
tggttggacacaaccataaatcttttatatttaggcacac |
41827913 |
T |
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