View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_high_2 (Length: 740)
Name: NF17520_high_2
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 456 - 724
Target Start/End: Original strand, 45102736 - 45103005
Alignment:
| Q |
456 |
tattggttatccacctgtgttttctgcccaattccttttgaaaatcgcctcatgtatttccaaaaccaactgtcagtatgacacgttgt-tttcgtgatt |
554 |
Q |
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| T |
45102736 |
tattggttacccacctgtgttttctgcccaattccttttgaaaatcgcctcatgtatttccacaaccaactgtcagcatgacacgttggctttcgtgatt |
45102835 |
T |
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| Q |
555 |
tctcgggatggtttttgtcgcggtgtataacagtacttaataaattatgtttctcaatcagataaacctctaagctcttgtggaaccctcagtaacttga |
654 |
Q |
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| T |
45102836 |
tcttgggatggtttttgtcgcggtgtacaacagtattgaataaattatgtttctcaatcagataaacctctaagctcttgtggaaccctcaataacttga |
45102935 |
T |
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| Q |
655 |
gcgttggagccaatcatcctttttatggatcgtcgccatcctacactacattcgagtaactccaactgtt |
724 |
Q |
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| T |
45102936 |
gcgttggagccaatcatcctttttatggatcgtcgccatcctacactacattcgagtaactccaactgtt |
45103005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 45102347 - 45102488
Alignment:
| Q |
20 |
attgtgtaaacgtgacaatgttgaatgtcctttccaaattgaaaagcttcgttcacatgtttttggtcaggagactttactcgtggcctctgagctgctg |
119 |
Q |
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| T |
45102347 |
attgtgtaaacgtgaccatgttgaatgtcctttccaaattgaaaagcttcgttcacatgtttttggtcaggagactttactcgtggcctctgagctgctg |
45102446 |
T |
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| Q |
120 |
gtaagatatgcgtccttttctgtttagggaccaaatcaatcg |
161 |
Q |
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| T |
45102447 |
gtaagatatgcgtccttttctgtttagggaccaaatcaatcg |
45102488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 228 - 418
Target Start/End: Original strand, 45102555 - 45102736
Alignment:
| Q |
228 |
attcacataataatcatttt-attacaatcaactgtagtcagttagcatttattactgtatattccaatcatactagatcgtatgaaaggaacgatataa |
326 |
Q |
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| T |
45102555 |
attcacataataatcatttttattacaatcaactgtagtcagttagcatttattactgtatattccaatcatactagatcgt-------gaa---tataa |
45102644 |
T |
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| Q |
327 |
ataatgttagaattatttgtactaataatgtgagaattattactagtaactctaacatgagcgttactagtaataaattaaattagaataat |
418 |
Q |
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| T |
45102645 |
ataattttagaattatttgtactaataatgtgagaattattactagtaactctaacatgagcgttactagtaataaattaaattcgaataat |
45102736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 449 - 591
Target Start/End: Original strand, 8255019 - 8255161
Alignment:
| Q |
449 |
gcattcctattggttatccacctgtgttttctgcccaattccttttgaaaatcgcctcatgtatttccaaaaccaactgtcagtatgacacgttgttttc |
548 |
Q |
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| T |
8255019 |
gcattcctattggctaaccacctgtgttttccgcccaattccttttgaaaaccatctcatgtatgttcacacccaactctgagtatgacatattgccttt |
8255118 |
T |
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| Q |
549 |
gtgatttctcgggatggtttttgtcgcggtgtataacagtact |
591 |
Q |
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| T |
8255119 |
gtgatttcttgggattgtttttctcgcggtgtatagcagtact |
8255161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 450 - 583
Target Start/End: Complemental strand, 18962751 - 18962619
Alignment:
| Q |
450 |
cattcctattggttatccacctgtgttttctgcccaattccttttgaaaatcgcctcatgtatttccaaaaccaactgtcagtatgacacgttgttttcg |
549 |
Q |
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| T |
18962751 |
cattcctattggctacccacccgtgttttgtgcccaattccttt-gataaccgcctcatgtattttcacaaccaactctcagtgtgacatgttgctttcg |
18962653 |
T |
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| Q |
550 |
tgatttctcgggatggtttttgtcgcggtgtata |
583 |
Q |
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| T |
18962652 |
tgatttctcgggacggtttttgtcgtggtgtata |
18962619 |
T |
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