View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17520_high_3 (Length: 614)

Name: NF17520_high_3

Description: NF17520

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17520_high_3

[»] chr2 (1 HSPs)

Alignment Details

Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 377; E-Value: 0

Query Start/End: Original strand, 17 - 614

Target Start/End: Original strand, 45100185 - 45100787

Alignment:

Q	17	aaatctatagtttaatgtttaagaatctattacgttgagttgattcaagaggattcctcttatacagatttgagtaaactcacagatatcatcctatcat	116	Q
		\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45100185	aaatcgatggtttaatgtttaagaatctattacgttgagttgattcaagaggattcctcttatacagatttgagtaaactcacagatatcatcctatcat	45100284	T

Q	117	aaacaattttatgggcagagttataaaatccacacagacaaacaaaaagatagtctatgacaacgcttcattagataggcattgttatattatcttcttt	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45100285	aaacaattttatgggtaaagttataaaatccacacagacaaacaaaaagatagtctatgacaacgcttcattagataggcattgttatattatcttcttt	45100384	T

Q	217	gacaatg----tctaagactacttatttactttacgcgctagtagagcctattcttttgcaacgtttacaatgcatatagcnnnnnnntgttgtcaatgg	312	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	45100385	gacaatgtgtttctaagagtacttatttactttacgtgctaggagagcctattcttttgcaacgtttacaatgcatatagcaaaaaaatgttgtcaatgg	45100484	T

Q	313	ttgactttgacaatgttgatcaaagcttaaaagcattgtcaagggagcttaacaacacnnnnnnnngaagaagagcttaacaacacttatttcacatgaa	412	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45100485	ttgactttgacaatgttgatcaaagctaaaaagcattgtcaagggagcttaacaacatttttttttgaagaagagcttaacaacacttatttcacatgaa	45100584	T

Q	413	aaagttttgtcataacatacaataacacatgtataccaacgcttttaagcgttgttaaagtaggttaacatcaccgataac--nnnnnnnnnnaaggagt	510	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	45100585	aaagttttgtcataacatacaataacacatgtataccaacgcttttaagcgttgttaaagtaggctaacatcatcgataactttttttctttcaaggagt	45100684	T

Q	511	ggactggcttgccagtaagacgacagctannnnnnnnnnnnnnnnnnnnngtattctttcaagctattacttgcgacctgtcctccaataataacctaca	610	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45100685	ggactggtttgccagtaagacgacaacta-tttttgtatatattttttttgtattctttcaggctattacttgcgacctgtcctccaataataacctaca	45100783	T

Q	611	aatt	614	Q
		\|\|\|\|
T	45100784	aatt	45100787	T

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