View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_high_6 (Length: 438)
Name: NF17520_high_6
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 224 - 418
Target Start/End: Complemental strand, 24591886 - 24591692
Alignment:
| Q |
224 |
tagaggctttgatttcacttgatgctcttcagggtccttcatttgcatttgcagtgtagttctgtggaaaacacactaaaccattttaccacatatatat |
323 |
Q |
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| T |
24591886 |
tagaggctttgatttcacttgatgctcttctgggtccttcatttgcatttgcagtgtagttctgtggaaaacacactaaaccattttaccacatatatat |
24591787 |
T |
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| Q |
324 |
agagaaagtaaataatacataggtaaaacaagttttacattaatattttatcttctctcaacattgtaaataaaaactatttatataatggtaac |
418 |
Q |
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| T |
24591786 |
agagaaagtaaataatacataggtaaaacaagttttacattaatattttatcttctctcaacattgtaaataaaaaatatttatataatgataac |
24591692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 24592104 - 24591950
Alignment:
| Q |
6 |
tagattatacttacattgtaatggcttaaatcagagacagatatatctacaagaaaatggttggctttgatgagacacttagtcccaagttggccataac |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24592104 |
tagattagacttacattgtaatggcttaaatcagagacagatatatctacaagaaaatggttggctttgatgagacacttagtcccaagttggccataac |
24592005 |
T |
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| Q |
106 |
caggcctgcaaggaaacattaggctactctttgattcaactcctatttcatgtga |
160 |
Q |
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| T |
24592004 |
caggcctgcaaggaaacattaggctactctttgattcaactcctgtttcatgtga |
24591950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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