View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17520_low_1 (Length: 911)

Name: NF17520_low_1
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17520_low_1
NF17520_low_1
[»] chr4 (14 HSPs)
chr4 (365-894)||(2771218-2771746)
chr4 (403-607)||(45920347-45920550)
chr4 (403-607)||(55000731-55000935)
chr4 (442-579)||(24551778-24551915)
chr4 (485-722)||(20773873-20774106)
chr4 (271-312)||(2771124-2771165)
chr4 (453-520)||(37273244-37273311)
chr4 (184-276)||(11384186-11384278)
chr4 (754-809)||(2181981-2182036)
chr4 (754-809)||(19550509-19550564)
chr4 (403-517)||(55976210-55976324)
chr4 (184-271)||(44491718-44491805)
chr4 (403-485)||(2181804-2181886)
chr4 (403-485)||(19550330-19550412)
[»] chr3 (12 HSPs)
chr3 (15-271)||(21966567-21966822)
chr3 (15-271)||(21989003-21989258)
chr3 (93-274)||(21966963-21967144)
chr3 (93-274)||(21989399-21989580)
chr3 (403-688)||(11652337-11652625)
chr3 (485-722)||(264592-264832)
chr3 (453-517)||(45080397-45080461)
chr3 (453-517)||(46149723-46149787)
chr3 (403-485)||(21727456-21727538)
chr3 (491-541)||(34277141-34277191)
chr3 (734-809)||(11652674-11652749)
chr3 (754-809)||(21727305-21727360)
[»] chr6 (7 HSPs)
chr6 (93-270)||(20487184-20487361)
chr6 (93-274)||(20481638-20481819)
chr6 (15-76)||(20486910-20486971)
chr6 (602-722)||(8488703-8488828)
chr6 (485-541)||(8488595-8488651)
chr6 (184-270)||(22970091-22970177)
chr6 (184-270)||(23818217-23818303)
[»] chr8 (6 HSPs)
chr8 (93-273)||(24860149-24860329)
chr8 (98-270)||(24858944-24859115)
chr8 (403-517)||(28929889-28930003)
chr8 (754-809)||(32414300-32414355)
chr8 (754-809)||(39860333-39860388)
chr8 (403-485)||(39860156-39860238)
[»] chr7 (7 HSPs)
chr7 (442-703)||(23900397-23900657)
chr7 (442-565)||(14305172-14305295)
chr7 (574-809)||(23900668-23900903)
chr7 (608-722)||(24581362-24581481)
chr7 (208-274)||(18993631-18993697)
chr7 (453-520)||(47719596-47719663)
chr7 (403-485)||(13785520-13785602)
[»] chr1 (5 HSPs)
chr1 (442-674)||(24992052-24992284)
chr1 (403-568)||(47967905-47968070)
chr1 (574-809)||(24992324-24992559)
chr1 (602-722)||(30663669-30663795)
chr1 (184-271)||(48678058-48678145)
[»] chr5 (5 HSPs)
chr5 (403-607)||(9407293-9407496)
chr5 (403-607)||(19129360-19129563)
chr5 (442-518)||(16538880-16538956)
chr5 (453-520)||(1282022-1282089)
chr5 (403-481)||(2313990-2314068)
[»] chr2 (7 HSPs)
chr2 (602-722)||(11750492-11750617)
chr2 (754-809)||(15902657-15902712)
chr2 (754-809)||(16692762-16692817)
chr2 (403-485)||(15902808-15902890)
chr2 (485-541)||(11750384-11750440)
chr2 (184-270)||(28240793-28240879)
chr2 (237-274)||(3833504-3833541)
[»] scaffold0093 (1 HSPs)
scaffold0093 (602-720)||(23423-23546)
[»] scaffold0625 (1 HSPs)
scaffold0625 (208-274)||(8000-8066)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 365 - 894
Target Start/End: Original strand, 2771218 - 2771746
Alignment:
Q  365 agtcaggaccgttgaacgccaaactaaactttgatactaaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcg 464  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  2771218 agtcaggaccgttgaacgtcaaactaaactttgatactaaatcttaaacattcatttctcttaattcaatggtcatcaattattcattaaaatcttagcg 2771317  T
Q  465 tgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatat 564  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2771318 tgggcattcaatatttcatatttacattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatat 2771417  T
Q  565 tatcttacaaaagaattgtttcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttattaacataaac 664  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2771418 tatcttacaaaagaattgtttcatgattgttaaattgctttatatttatccttcacatgaatcaatcattagctagcatgtaaactttattaacataaat 2771517  T
Q  665 cttgaatctgagtttgacacatcgagtgccaaaatttagcatccaatctattttaatgat-nnnnnnnnnttctagaaactaaaaatttgagaataatga 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||    
T  2771518 cttgaatctgagtttgacacatcgagtgccaaaatttagcatccaatctattttaatgataaaaagaaaaatttagaaactaaaaatttgagaataatga 2771617  T
Q  764 aatctctacctccaaccatggcaaataatagaaacatcatggatgacatacgaaagaaacgggaaagnnnnnnnnnnncaataagaggttggaaatatga 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  2771618 aatctctacctccaaccatggcaaataatagaaacatcatggatgacatacgaaagaaacgggaaag--aaaaaaaaacaataagaggttggaaatatga 2771715  T
Q  864 ggctttagagaagaatatgaatgaaagattt 894  Q
    || ||||||||||||||||||||||||||||    
T  2771716 ggttttagagaagaatatgaatgaaagattt 2771746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 403 - 607
Target Start/End: Original strand, 45920347 - 45920550
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||||| ||||||||| |||||  || ||| |  ||||||| || |||||||||  ||||||| | | |||||||||| ||| ||||||||| |     
T  45920347 aaatcttaagcgttcatttcttttaatctaaaggtcaataattattgatcaaaatcttaatgtgggcacttagtatttcatatctcctttcctaaaaatc 45920446  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgt 602  Q
    |||||||||||||||| | ||  |||||||||||||||||| ||  || ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||    
T  45920447 ctcttgtttcctaaactatacctatcttcttctcaatgatatat-atgtaccaacaccatgttatctttcaaaagaattgattcatggttgttaaattgt 45920545  T
Q  603 tttat 607  Q
    |||||    
T  45920546 tttat 45920550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 403 - 607
Target Start/End: Original strand, 55000731 - 55000935
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||| | ||||||||| |||||  || ||| |  ||||||| || |||||||||  ||| ||| | | |||||||||| ||| ||||||||| |     
T  55000731 aaatcttaaacgttcatttcttttaatctaaaggtcaataattattgatcaaaatcttaatgtgagcacttagtatttcatatctcctttcctaaaaatc 55000830  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgt 602  Q
     ||||||||||||||| | ||  |||||||||||||||||| ||| || ||||||||||| ||||||| ||||||||||| ||| || | ||||||||||    
T  55000831 atcttgtttcctaaactatacctatcttcttctcaatgatatatcatgtaccaacaccatgttatctttcaaaagaattggttcgtggtggttaaattgt 55000930  T
Q  603 tttat 607  Q
    |||||    
T  55000931 tttat 55000935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 442 - 579
Target Start/End: Original strand, 24551778 - 24551915
Alignment:
Q  442 aattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    |||||||||| |||||||||  ||||  ||| | |||||||||| ||| ||||||||| | ||||||||| ||||  | ||||  |||||||||||||||    
T  24551778 aattattcatgaaaatcttaatgtggatattaagtatttcatatctcctttcctaaaaatcctcttgttttctaattgggacttgtcttcttctcaatga 24551877  T
Q  542 tacatcttgcaccaacaccatattatcttacaaaagaa 579  Q
    ||||||||| |||| || ||||||||||||||||||||    
T  24551878 tacatcttgtaccagcatcatattatcttacaaaagaa 24551915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 485 - 722
Target Start/End: Complemental strand, 20774106 - 20773873
Alignment:
Q  485 tttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtt 584  Q
    ||||| ||||||||| | ||||||||||||||| ||||| ||||||||||||||| | |  || ||||| |      | ||||| || ||||||||| ||    
T  20774106 tttcctttcctaaaaatcctcttgtttcctaaaagagacccatcttcttctcaataagatgtcctgcacta------tgttatcatataaaagaattatt 20774013  T
Q  585 tcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt---aacataaacc--ttgaatctgagttt 679  Q
    |||||   ||||| || |||||| |||||||||||| |||||||| |||||||||||||||||  ||| ||   ||||||||||  |||||| |||  ||    
T  20774012 tcatg---gttaattttttttatgtttatccttcacttgaatcaaacattagctagcatgtaatttttttttcaaacataaaccttttgaatatgaactt 20773916  T
Q  680 gacacatcgagtgccaaaatttagcatccaatctattttaatg 722  Q
     |||||||| |||||| |||| | |||||||||||||||||||    
T  20773915 aacacatcgtgtgccacaattcaacatccaatctattttaatg 20773873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 2771124 - 2771165
Alignment:
Q  271 taaattgtatgaagctctagtcattagattacttgaccaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2771124 taaattgtatgaagctctagtcattagattacttgaccaaaa 2771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 453 - 520
Target Start/End: Original strand, 37273244 - 37273311
Alignment:
Q  453 aaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacga 520  Q
    ||||||||| |||||||||| | |||||||||| ||| ||||||||| | ||||||||||||||||||    
T  37273244 aaaatcttaacgtgggcatttagtatttcatatctcctttcctaaaaatcctcttgtttcctaaacga 37273311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 11384278 - 11384186
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaatt 276  Q
    |||||||||| ||||| ||| ||||||| | | |||||||||  ||| | |  ||||||||||||||||||  ||||||||||||||||||||    
T  11384278 ttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcctaaatt 11384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Complemental strand, 2182036 - 2181981
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  2182036 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 2181981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Complemental strand, 19550564 - 19550509
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  19550564 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 19550509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 517
Target Start/End: Original strand, 55976210 - 55976324
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||| | ||||||||| |||||  || ||| |  ||| ||| || |||||||||  ||||||||| |||||||||||| ||| ||||||||| |     
T  55976210 aaatcttaaacgttcatttcttttaatctaaaggtcaataatcatttatcaaaatcttaatgtgggcatttaatatttcatatctcctttcctaaaaatc 55976309  T
Q  503 ctcttgtttcctaaa 517  Q
    ||||||||| |||||    
T  55976310 ctcttgttttctaaa 55976324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 44491805 - 44491718
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 271  Q
    |||||||||||||||||  | ||||||||| | |||||||||  ||| | |  ||||||||||||||||||  ||| |||||||||||    
T  44491805 ttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct 44491718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 2181804 - 2181886
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    ||||||||||| |||||||||||||||  |||||| |  ||| |||||| ||||| |||  |||| |||||||||||| ||||    
T  2181804 aaatcttaagcgttcatttctcttaatctaatggtcaataatgattcatcaaaatattaatgtggacattcaatattttatat 2181886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 19550330 - 19550412
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    |||| |||||| |||||||||||||||  |||||| |  ||| |||||| |||||||||  |||| |||||||||||| ||||    
T  19550330 aaattttaagcgttcatttctcttaatctaatggtcaataatgattcatcaaaatcttaatgtggacattcaatattttatat 19550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 21966822 - 21966567
Alignment:
Q  15 ctgtgaaacgaaaacgaaactgcaaactctcgaatctgtgacctgtgattgcgactgtgaaatgttccacatcagcgaccataagcgccacatcaacgac 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  21966822 ctgtgaaacgaaaacgaaactgcaaactctcgaatttgtgacctgcgattgcgactgtgaaacgttcgacatcagcgaccataagcgccacatcagcgac 21966723  T
Q  115 catgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaatt 214  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21966722 catgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaatt 21966624  T
Q  215 aagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 271  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21966623 aaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 21989258 - 21989003
Alignment:
Q  15 ctgtgaaacgaaaacgaaactgcaaactctcgaatctgtgacctgtgattgcgactgtgaaatgttccacatcagcgaccataagcgccacatcaacgac 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  21989258 ctgtgaaacgaaaacgaaactgcaaactctcgaatttgtgacctgcgattgcgactgtgaaacgttcgacatcagcgaccataagcgccacatcagcgac 21989159  T
Q  115 catgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaatt 214  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21989158 catgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaatt 21989060  T
Q  215 aagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 271  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21989059 aaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21989003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 93 - 274
Target Start/End: Original strand, 21966963 - 21967144
Alignment:
Q  93 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 192  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  193 caaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 274  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21967144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 93 - 274
Target Start/End: Original strand, 21989399 - 21989580
Alignment:
Q  93 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 192  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  193 caaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 274  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21989580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 403 - 688
Target Start/End: Original strand, 11652337 - 11652625
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||| ||||| ||||||||| |||||  || ||| |  |||||||||| |||||||||  |||| |||| | |||||||||| ||| ||||||||| |     
T  11652337 aaatcctaagcgttcatttcttttaatctaaaggtcaataattattcatcaaaatcttaatgtggacattaagtatttcatatctcctttcctaaaaatc 11652436  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgat---acatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaat 599  Q
    || |||||||||||| | ||||  ||||||||||||||||   ||||| || |||| || ||||||||||||||||||||||| |||||| ||||| |||    
T  11652437 cttttgtttcctaaatgggacttgtcttcttctcaatgatgatacatcctgtaccagcatcatattatcttacaaaagaattggttcatggttgtttaat 11652536  T
Q  600 tgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttattaacataaaccttgaatctgagtttgacacatcg 688  Q
    |||||||| ||||||||| ||||||||||| |||||| ||||||||||  ||| |||||||||||||||||||| ||||||||| ||||    
T  11652537 tgttttatgtttatccttgacatgaatcaagcattagttagcatgtaattttttttaacataaaccttgaatctaagtttgacaaatcg 11652625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 485 - 722
Target Start/End: Original strand, 264592 - 264832
Alignment:
Q  485 tttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtt 584  Q
    ||||| ||||||||| | ||||| ||||||||| ||||||||||||||||||||||| |  || ||||| |     || ||||| ||  |||||||| ||    
T  264592 tttcctttcctaaaaatcctcttatttcctaaaagagactcatcttcttctcaatgagatgtcctgcactatgtt-atgttatcataagaaagaattatt 264690  T
Q  585 tcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt-----aacataaacc--ttgaatctgagt 677  Q
    |||||   ||||| || ||||||||||||||||||| |||||||| |||||||||||||||||  ||| ||     ||||||||||  ||||||||||      
T  264691 tcatg---gttaattttttttatatttatccttcacttgaatcaaacattagctagcatgtaatttttttttttcaaacataaaccttttgaatctgaac 264787  T
Q  678 ttgacacatcgagtgccaaaatttagcatccaatctattttaatg 722  Q
    || |||| ||| |||| | |||| | |||||||||||||||||||    
T  264788 ttaacacgtcgtgtgcaacaattcaacatccaatctattttaatg 264832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 45080397 - 45080461
Alignment:
Q  453 aaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaa 517  Q
    |||||||||  || ||||||||||||||||||| ||| ||||||||| | |||||||||||||||    
T  45080397 aaaatcttaatgtaggcattcaatatttcatatctcctttcctaaaaatcctcttgtttcctaaa 45080461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 46149723 - 46149787
Alignment:
Q  453 aaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaa 517  Q
    |||||||||  || ||||||||||||||||||| ||| ||||||||| | |||||||||||||||    
T  46149723 aaaatcttaatgtaggcattcaatatttcatatctcctttcctaaaaatcctcttgtttcctaaa 46149787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 21727538 - 21727456
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    ||||||||||| |||||||||||||||  |||||| |  ||| |||||| |||||||||  |||| |||||||||||| ||||    
T  21727538 aaatcttaagcgttcatttctcttaatctaatggtcaataatgattcatcaaaatcttaatgtggacattcaatattttatat 21727456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 34277191 - 34277141
Alignment:
Q  491 ttcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||||||    
T  34277191 ttcctaaaaatgatcttgtttcctaaaagagactcatcttcttctcaatga 34277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 809
Target Start/End: Original strand, 11652674 - 11652749
Alignment:
Q  734 ttctagaaactaaaaatttgagaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||| ||||||||  |||||  |||||| |||||||||||| |||| |||| || ||||||||||||||||    
T  11652674 ttctacaaattaaaaattcaagaatcgtgaaatttctacctccaacaatggtaaatgatggaaacatcatggatga 11652749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 809
Target Start/End: Original strand, 21727305 - 21727360
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| ||||||||| |||||||||    
T  21727305 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacaccatggatga 21727360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 3e-81; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 93 - 270
Target Start/End: Original strand, 20487184 - 20487361
Alignment:
Q  93 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 192  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  193 caaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 270  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 93 - 274
Target Start/End: Complemental strand, 20481819 - 20481638
Alignment:
Q  93 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 192  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  193 caaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 274  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20481719 caaaatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaagggaccagatatataattaagcctaaa 20481638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 20486971 - 20486910
Alignment:
Q  15 ctgtgaaacgaaaacgaaactgcaaactctcgaatctgtgacctgtgattgcgactgtgaaa 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  20486971 ctgtgaaacgaaaacgaaactgcaaattctcgaatctgtgacctgcgattgcgactgtgaaa 20486910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 722
Target Start/End: Original strand, 8488703 - 8488828
Alignment:
Q  602 ttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt---aacataaacc--ttgaatctgagtttgacacatcgagtgccaa 696  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||  ||| ||   ||||||||||  ||||||||||  || |||||||| ||||||     
T  8488703 ttttatgtttatccttcacttgaatcaaacattagctagcatgtaatttttttttcaaacataaaccttttgaatctgaacttaacacatcgtgtgccac 8488802  T
Q  697 aatttagcatccaatctattttaatg 722  Q
    |||| | ||||| |||||||||||||    
T  8488803 aattcaacatccgatctattttaatg 8488828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 8488595 - 8488651
Alignment:
Q  485 tttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    ||||| |||||||||   ||||||||||||||| ||||| |||||||||||||||||    
T  8488595 tttcctttcctaaaaaccctcttgtttcctaaaagagacccatcttcttctcaatga 8488651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 22970177 - 22970091
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 270  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  22970177 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 22970091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 23818217 - 23818303
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 270  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  23818217 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 23818303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 7e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 93 - 273
Target Start/End: Original strand, 24860149 - 24860329
Alignment:
Q  93 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 192  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||| ||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  193 caaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 273  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 24860329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 24859115 - 24858944
Alignment:
Q  98 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 197  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  198 tgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 270  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  24859015 tgaacctaaaaataattaagggaccaaaacgaattttgataattatttaa-ggcctagatatataattaagcc 24858944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 517
Target Start/End: Original strand, 28929889 - 28930003
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||| | ||||||||| |||||  || ||| |  ||| ||| || |||||||||  || ||||||||||||||||||| ||| ||||||||| |     
T  28929889 aaatcttaaactttcatttcttttaatctaaaggtcaataatcatttataaaaatcttaatgtaggcattcaatatttcatatctcctttcctaaaaatc 28929988  T
Q  503 ctcttgtttcctaaa 517  Q
    |||||||||||||||    
T  28929989 ctcttgtttcctaaa 28930003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Original strand, 32414300 - 32414355
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  32414300 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 32414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Complemental strand, 39860388 - 39860333
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  39860388 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 39860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 39860156 - 39860238
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    ||||||||||| |||||||||||||||  |||||| |  ||| |||||| ||||| |||  |||| |||||||||||| ||||    
T  39860156 aaatcttaagcgttcatttctcttaatctaatggtcaataatgattcatcaaaatattaatgtggacattcaatattttatat 39860238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 442 - 703
Target Start/End: Original strand, 23900397 - 23900657
Alignment:
Q  442 aattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    |||||||||| |||||||||  ||||  ||| |||||||||||| ||| || |||||| | ||||||||||||||| | ||||  |||||||||||||||    
T  23900397 aattattcatcaaaatcttaatgtggatattaaatatttcatatctcctttactaaaaatcctcttgtttcctaaatgggacttgtcttcttctcaatga 23900496  T
Q  542 tacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagc 641  Q
    ||||||||| || | || || |||||||||||||||||||| |||||| ||||| ||||||||||| ||||||  | ||||||||||| |||||| | ||    
T  23900497 tacatcttgtac-agcatcaaattatcttacaaaagaattggttcatggttgtttaattgttttatgtttatctgtgacatgaatcaagcattagttggc 23900595  T
Q  642 atgtaaactttattaacataaaccttgaatctgagtttgacacatcgagtgccaaaatttag 703  Q
    || |||| ||| | ||||||||||||||||||| |||||||||||||  ||||| |||||||    
T  23900596 atctaaattttttaaacataaaccttgaatctgcgtttgacacatcgtatgccacaatttag 23900657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 442 - 565
Target Start/End: Original strand, 14305172 - 14305295
Alignment:
Q  442 aattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    |||||||||| |||||||||  ||| |||||||||||||||||| ||| ||||||||| |  |||| ||||||||||||||||  ||||||||  | |||    
T  14305172 aattattcatcaaaatcttaatgtgcgcattcaatatttcatatctcctttcctaaaaatcatcttctttcctaaacgagacttgtcttcttcctagtga 14305271  T
Q  542 tacatcttgcaccaacaccatatt 565  Q
    |||||| |  |||| |||||||||    
T  14305272 tacatcctctaccagcaccatatt 14305295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 574 - 809
Target Start/End: Original strand, 23900668 - 23900903
Alignment:
Q  574 aaagaattgtttcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttattaacataaaccttgaatct 673  Q
    ||||||| | |||||| ||||| ||||||||||| |||||||   ||||||||||| |||||| |||||| |||| ||| | |||||||||||| |||||    
T  23900668 aaagaatcgattcatggttgtttaattgttttatgtttatcc---acatgaatcaagcattagttagcatttaaattttttcaacataaaccttaaatct 23900764  T
Q  674 gagtttgacacatcgagtgccaaaatttagcatccaatctattttaatg---atnnnnnnnnnttctagaaactaaaaatttgagaataatgaaatctct 770  Q
     ||||||||| ||||  ||||| ||||| | | || | |||||| ||||   ||         ||||| ||||||||| ||  ||||| ||||| | | |    
T  23900765 aagtttgacaaatcgtatgccacaatttgggaacctaactatttcaatgataatattttctagttctacaaactaaaatttcaagaatcatgaatttttt 23900864  T
Q  771 acctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||||||| ||||||||| || ||||||||||||||||    
T  23900865 acctccaacaatggcaaatgatggaaacatcatggatga 23900903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 722
Target Start/End: Complemental strand, 24581481 - 24581362
Alignment:
Q  608 atttatccttcacatgaatcaatcattagctagcatgtaaactttatt---aacataaacc--ttgaatctgagtttgacacatcgagtgccaaaattta 702  Q
    ||||||||||||| ||||||||  ||||||||||||||||  ||| ||   ||||||||||  |||||| |||  || |||||||| |||||| |||| |    
T  24581481 atttatccttcacttgaatcaaatattagctagcatgtaatttttttttcaaacataaaccttttgaatatgaacttaacacatcgtgtgccacaattca 24581382  T
Q  703 gcatccaatctattttaatg 722  Q
     |||||||||||||||||||    
T  24581381 acatccaatctattttaatg 24581362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 18993697 - 18993631
Alignment:
Q  208 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 274  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  18993697 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 18993631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 520
Target Start/End: Complemental strand, 47719663 - 47719596
Alignment:
Q  453 aaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacga 520  Q
    |||||||||  |||| |||||| |||||||||| ||| ||||||||| | ||||| ||||||||||||    
T  47719663 aaaatcttaatgtggacattcagtatttcatatctcctttcctaaaaatcctcttatttcctaaacga 47719596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 13785602 - 13785520
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    ||||||||||| || ||||||||||||  || ||| |  |||||||||| ||||| ||| |||||||||||| ||||| ||||    
T  13785602 aaatcttaagcgttaatttctcttaatctaaaggtcaataattattcataaaaattttaacgtgggcattcagtattttatat 13785520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 442 - 674
Target Start/End: Original strand, 24992052 - 24992284
Alignment:
Q  442 aattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    |||||||||| |||||||||  |||| |||| | |||||||||| ||| ||| ||||| | || |||||||||||| | ||||  |||||||||||||||    
T  24992052 aattattcatcaaaatcttaatgtggacattaagtatttcatatctcctttcataaaaatccttttgtttcctaaatgggacttgtcttcttctcaatga 24992151  T
Q  542 tacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagc 641  Q
    || ||| || |||| || ||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||  | ||||||||||| |||||| ||||    
T  24992152 tatatcctgtaccagcatcatattatcttacaaaagaattggttcatggttgtttaattgttttatgtttatctgtgacatgaatcaagcattagttagc 24992251  T
Q  642 atgtaaactttattaacataaaccttgaatctg 674  Q
    ||||||| ||| | |||||||||||||||||||    
T  24992252 atgtaaattttttaaacataaaccttgaatctg 24992284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 403 - 568
Target Start/End: Original strand, 47967905 - 47968070
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||| ||| |||||||||||||||  || ||| |  |||||||||| |||||||||  ||||||||| |||||||||||| ||| ||||||||| |     
T  47967905 aaatcttgagcgttcatttctcttaatctaaaggtcaataattattcatcaaaatcttattgtgggcatttaatatttcatatctcctttcctaaaaatc 47968004  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatc 568  Q
     |||||||||||||||||||||  |||||||| |||| ||||||| || |||| ||||||||||||    
T  47968005 ttcttgtttcctaaacgagacttgtcttcttcacaattatacatcatgtaccagcaccatattatc 47968070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 574 - 809
Target Start/End: Original strand, 24992324 - 24992559
Alignment:
Q  574 aaagaattgtttcatgattgttaaattgttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttattaacataaaccttgaatct 673  Q
    ||||||| | |||||| ||||| ||||||||||| |||||||   ||||||||||| |||  | |||||| |||| ||| | ||||||||||||||||||    
T  24992324 aaagaatcgattcatggttgtttaattgttttatgtttatcc---acatgaatcaagcatctgttagcatttaaattttttcaacataaaccttgaatct 24992420  T
Q  674 gagtttgacacatcgagtgccaaaatttagcatccaatctattttaatg---atnnnnnnnnnttctagaaactaaaaatttgagaataatgaaatctct 770  Q
     ||||||||| ||||  ||||| ||||| | | || | || ||| ||||   ||         ||||| ||||||||| ||  ||||| ||||||| |||    
T  24992421 aagtttgacaaatcgtatgccacaatttgggaacctaactttttcaatgataattttttctagttctacaaactaaaatttcaagaatcatgaaatttct 24992520  T
Q  771 acctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||||||| ||||||||| || ||||||||||||||||    
T  24992521 acctccaacaatggcaaatgatggaaacatcatggatga 24992559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 722
Target Start/End: Complemental strand, 30663795 - 30663669
Alignment:
Q  602 ttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt----aacataaacc--ttgaatctgagtttgacacatcgagtgcca 695  Q
    |||||| |||||||||||| ||||||||  ||||||||||||||||  ||| ||     |||||||||  |||||| |||  || |||||||| ||||||    
T  30663795 ttttatgtttatccttcacttgaatcaaatattagctagcatgtaattttttttttcatacataaaccttttgaatatgaacttaacacatcgtgtgcca 30663696  T
Q  696 aaatttagcatccaatctattttaatg 722  Q
     |||| | |||||||||||||||||||    
T  30663695 caattcaacatccaatctattttaatg 30663669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 48678058 - 48678145
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 271  Q
    ||||| |||||||||| | | ||||||||| ||||||||||| |||| | |  ||||||||||||| ||||  |||||||| ||||||    
T  48678058 ttaaatgaccaaaatggagcgaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcct 48678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 403 - 607
Target Start/End: Original strand, 9407293 - 9407496
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||||| ||||||||| |||||  || ||| |  ||||||| || |||||||||  |||| || | | |||||||||| ||| ||||||||| |     
T  9407293 aaatcttaagcgttcatttcttttaatctaaaggtcaataattattgataaaaatcttaatgtggacacttagtatttcatatctcctttcctaaaaatc 9407392  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgt 602  Q
    |||||||||||||||| | ||  |||||||||||| ||||| || | | ||||||||||| |||| || ||||||||||| |||||| ||||||||||||    
T  9407393 ctcttgtttcctaaactatacctatcttcttctcattgatatatat-gtaccaacaccatgttatttttcaaaagaattgattcatggttgttaaattgt 9407491  T
Q  603 tttat 607  Q
    |||||    
T  9407492 tttat 9407496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 607
Target Start/End: Complemental strand, 19129563 - 19129360
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaattt 502  Q
    ||||||||||  ||||||||| |||||  || ||| |  ||||||| || |||||||||  ||||||| | | |||||||||| ||| ||||||||| |     
T  19129563 aaatcttaagtgttcatttcttttaatctaaaggtcaataattattgatcaaaatcttaatgtgggcacttagtatttcatatctcctttcctaaaaatc 19129464  T
Q  503 ctcttgtttcctaaacgagactcatcttcttctcaatgatacatcttgcaccaacaccatattatcttacaaaagaattgtttcatgattgttaaattgt 602  Q
    || ||||||||||||| | ||  ||| |||||||||| ||| ||| || || |||||||| ||||||| |||||||| || |||||| |||||||  |||    
T  19129463 ct-ttgtttcctaaactatacctatcgtcttctcaattatatatcatgtactaacaccatgttatctttcaaaagaactggttcatggttgttaagatgt 19129365  T
Q  603 tttat 607  Q
    |||||    
T  19129364 tttat 19129360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 442 - 518
Target Start/End: Complemental strand, 16538956 - 16538880
Alignment:
Q  442 aattattcattaaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaac 518  Q
    |||||||||| ||||||||| |||||||||| | |||||||||| ||| ||  ||||| | |||| |||||||||||    
T  16538956 aattattcatcaaaatcttaacgtgggcatttagtatttcatatctcctttattaaaaatcctctcgtttcctaaac 16538880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 520
Target Start/End: Original strand, 1282022 - 1282089
Alignment:
Q  453 aaaatcttagcgtgggcattcaatatttcatatttccattcctaaaatttctcttgtttcctaaacga 520  Q
    |||||||||  |||| |||||| |||||||||| ||| ||||||||| | ||||| ||||||||||||    
T  1282022 aaaatcttaatgtggacattcagtatttcatatctcctttcctaaaaatcctcttatttcctaaacga 1282089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 2313990 - 2314068
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttc 481  Q
    ||||||||| | |||||||||||||||  || ||| |  |||||||||| |||||||||  ||||||||| ||||||||    
T  2313990 aaatcttaaacgttcatttctcttaatctaaaggtcaataattattcatcaaaatcttaatgtgggcatttaatatttc 2314068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 722
Target Start/End: Original strand, 11750492 - 11750617
Alignment:
Q  602 ttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt---aacataaacc--ttgaatctgagtttgacacatcgagtgccaa 696  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||  ||| ||   ||||||||||  ||||||||||  || |||||||| ||||||     
T  11750492 ttttatgtttatccttcacttgaatcaaacattagctagcatgtaatttttttttcaaacataaaccttttgaatctgaacttaacacatcgtgtgccac 11750591  T
Q  697 aatttagcatccaatctattttaatg 722  Q
    |||| | ||||| |||||||||||||    
T  11750592 aattcaacatccgatctattttaatg 11750617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Original strand, 15902657 - 15902712
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  15902657 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 15902712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 809
Target Start/End: Original strand, 16692762 - 16692817
Alignment:
Q  754 agaataatgaaatctctacctccaaccatggcaaataatagaaacatcatggatga 809  Q
    ||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  16692762 agaatcatgaaatttctacctccaacaatggtaaatgatagaaacatcatggatga 16692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 15902890 - 15902808
Alignment:
Q  403 aaatcttaagcattcatttctcttaattcaatggtgaggaattattcattaaaatcttagcgtgggcattcaatatttcatat 485  Q
    ||||||||||| |||||||||||||||  |||||| |  ||| |||||| |||||||||  |||| |||||||||||| ||||    
T  15902890 aaatcttaagcgttcatttctcttaatctaatggtcaataatgattcatcaaaatcttaatgtggacattcaatattttatat 15902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 11750384 - 11750440
Alignment:
Q  485 tttccattcctaaaatttctcttgtttcctaaacgagactcatcttcttctcaatga 541  Q
    ||||| |||||||||   ||||||||||||||| ||||| |||||||||||||||||    
T  11750384 tttcctttcctaaaaaccctcttgtttcctaaaagagacccatcttcttctcaatga 11750440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 28240793 - 28240879
Alignment:
Q  184 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 270  Q
    ||||||||||||||||  || ||||||||| | |||||||||   || |||  ||||||||||||||||||  ||| ||||||||||    
T  28240793 ttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc 28240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 3833541 - 3833504
Alignment:
Q  237 taattatttaagggaccagatatataattaagcctaaa 274  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3833541 taattatttaagggaccaattatataattaagcctaaa 3833504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 720
Target Start/End: Complemental strand, 23546 - 23423
Alignment:
Q  602 ttttatatttatccttcacatgaatcaatcattagctagcatgtaaactttatt---aacataaacc--ttgaatctgagtttgacacatcgagtgccaa 696  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||  ||| ||   ||||||||||  ||||||||||  || ||| |||| ||||||     
T  23546 ttttatgtttatccttcacttgaatcaaacattagctagcatgtaatttttttttcaaacataaaccttttgaatctgaacttaacagatcgtgtgccac 23447  T
Q  697 aatttagcatccaatctattttaa 720  Q
    |||| | ||||| |||||||||||    
T  23446 aattcaacatccgatctattttaa 23423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 8000 - 8066
Alignment:
Q  208 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 274  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  8000 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 8066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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