View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17520_low_13 (Length: 316)
Name: NF17520_low_13
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 4727795 - 4728081
Alignment:
| Q |
18 |
gaagacaatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4727795 |
gaagacaatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttga |
4727894 |
T |
|
| Q |
118 |
tttctcttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4727895 |
tttctcttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttatttatactatgaa |
4727994 |
T |
|
| Q |
218 |
tagtgtattaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtggctgtggtcgtggatgtggatatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4727995 |
taatgtattaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtggctgtggtcgtggatgtggatatt |
4728081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 4738317 - 4738597
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||| |||| |||||| |
|
|
| T |
4738317 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattattgtaccactggttgcatcgttttcagcattagttgtaatcatttttatttctt |
4738416 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaatagtgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||| ||| ||||||| |||||||| || |
|
|
| T |
4738417 |
ttggattttggatattcagaagacaaaaaggtacttcacagattacataggaatgaattcatattctcaaataaggccttgtttatacaatgaatagcgt |
4738516 |
T |
|
| Q |
224 |
attaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtggctgtggtcgtggatgtggatatt |
304 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||| || | | |||||| |||||||||| |||| |
|
|
| T |
4738517 |
attaatccattggattgcatgtatatcttataagttgctacatggttttaacttcttgttgtggttgtggatgtggctatt |
4738597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 4751690 - 4751953
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||| || ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
4751690 |
aatcctgatctttgtatgacggaatcctgtaaaaagaaaaactttactgtacaactggttgcatcgttttcagcattagttgtaatccttttgatttctt |
4751789 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaatagtgt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
4751790 |
ttggattttggatattcagaagacaaaaaggtactactcagatgacataggaacgagttcatattctcaaataaggccttgtttatactatgaatgttgt |
4751889 |
T |
|
| Q |
224 |
attaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtggctgtgg |
287 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
4751890 |
attaatccattgatttgcatgtataactgataagtttctacatgattttaaattgtggttgtgg |
4751953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 24 - 281
Target Start/End: Original strand, 4705067 - 4705324
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||| |||||| ||||||||||||| |
|
|
| T |
4705067 |
aatcctgatctttgtaagacggaatcttgcaaaaagaagaacattgtagtaccacttgttgcatctttttcagcattagctgtaattcttttgatttctc |
4705166 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaatagtgt |
223 |
Q |
| |
|
||||| ||||| | || |||||||||| |||||||| |||| |||||||||| |||||||| || | |||||||| ||| ||||||||||||||||||| |
|
|
| T |
4705167 |
ttggaatttggttgtttagaagacaaacaggtacttatcagttgacataggaatgagttcatattttgaaataaggccttgtttatactatgaatagtgt |
4705266 |
T |
|
| Q |
224 |
attaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtgg |
281 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4705267 |
attaatccattagttggcaagtatatcttataagtcgctatatggtttgaaattgtgg |
4705324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 4717224 - 4717503
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||| |||||| ||||||||||||| |
|
|
| T |
4717224 |
aatcctgatctttgcatgacggaatcctgcaaaaagaagaacgttgttgtaccacttgttgcatctttatcagcattagctgtaattcttttgatttctc |
4717323 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaatagtgt |
223 |
Q |
| |
|
||||| ||||| | || |||||| ||| |||||||| |||| ||||| |||| |||||||| || |||||||||||||| |||||| | || ||||||| |
|
|
| T |
4717324 |
ttggaatttggttgtttagaagaaaaacaggtacttatcagttgacaaaggaatgagttcatatt-tcaaataaggtcttgtttatattttggatagtgt |
4717422 |
T |
|
| Q |
224 |
attaatccattggtttgcatgtatatcttataagttgctatatggttttaaattgtggctgtggtcgtggatgtggatatt |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||| | |||||||| |||| |
|
|
| T |
4717423 |
attaatccatcagtttgcatgtatatcttacaagttgctatatggttcgaaattgtggttgtggttgcggatgtggctatt |
4717503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 4690614 - 4690823
Alignment:
| Q |
51 |
tgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctcttggattttggatattcagaagacaaa |
150 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||| | ||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
4690614 |
tgcaaaaagaagaacattgctgtaccacttgttgcatcattttcagcattagttgtaatcgtcttgatttctcttggactttggatattgagaagacaga |
4690713 |
T |
|
| Q |
151 |
aaggtacttttcagatgacataggatcgagttcatgttctcaaataaggtcttctttatactatgaatagtgtattaatccattggtttgcatgtatatc |
250 |
Q |
| |
|
||||||||| | ||| ||||| ||| ||||| | |||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
4690714 |
aaggtacttcttagagtacataagattgagtttacattctcaaatatggccttgtttatactatgaatagtgtagtaatccattggtttgcatgtatgcc |
4690813 |
T |
|
| Q |
251 |
ttataagttg |
260 |
Q |
| |
|
||||| |||| |
|
|
| T |
4690814 |
ttataggttg |
4690823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 10448951 - 10449086
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||| ||||||||||||||||||||| |
|
|
| T |
10448951 |
aatcctgaactttgtacgacggaatcctgcaaaaagaagaacattgttgtaccacttgttacattgttttcaacattaattgtaatccttttgatttctc |
10449050 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtactt |
159 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10449051 |
ttggattttggatatatagaagacaaaaaggtactt |
10449086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 4682796 - 4682919
Alignment:
| Q |
29 |
tgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctcttgga |
128 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
4682796 |
tgatccttgtatgacggaatcttgcaaaaagaagaacattgctgtaccacttgttgcatcgttttcagcattagctgtaatccttttgatttctctagga |
4682895 |
T |
|
| Q |
129 |
ttttggatattcagaagacaaaaa |
152 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
4682896 |
ttttggctattcagaaaacaaaaa |
4682919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 4802965 - 4802833
Alignment:
| Q |
23 |
caatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttct |
122 |
Q |
| |
|
||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| || ||||| | ||||| ||| |
|
|
| T |
4802965 |
caatcatgatctttgtatgacgggttcgtgcaaaaagaagaacattgttgtaccacttgttgcatcattttcagcattatttctaatcatcttgatctct |
4802866 |
T |
|
| Q |
123 |
cttggattttggatattcagaagacaaaaaggt |
155 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||| |
|
|
| T |
4802865 |
cttggatttcgcatattcaaaagacaaaaaggt |
4802833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 4848166 - 4848031
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttg---attt |
120 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||||| ||| || ||||| | ||| || | |
|
|
| T |
4848166 |
aatcctgatctttgtatgacgggttcatgcaaaaagaagaacattgttgtaccacttgttgcatcattttcagcattatttctaatcatcttgatcatct |
4848067 |
T |
|
| Q |
121 |
ctcttggattttggatattcagaagacaaaaaggta |
156 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
4848066 |
ctcttggatttcgcatattcaaaagacaaaaaggta |
4848031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 4888563 - 4888425
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaaca--ttgtt-gtaccacttgttgcatcgttctcagctttagttgtaatccttttgattt |
120 |
Q |
| |
|
||||||| |||||||| ||| ||||| |||||||||||||| | ||||| ||||||||| ||||||| || ||||| || |||||||||| ||||||| |
|
|
| T |
4888563 |
aatcctggtctttgtaagactgaatcatgcaaaaagaagaagaaattgtttgtaccacttattgcatcattttcagcatttattgtaatcctcttgattt |
4888464 |
T |
|
| Q |
121 |
ctcttggattttggatattcagaagacaaaaaggtactt |
159 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
4888463 |
ctcttggatttcggatgttcagaagacaaacaggtactt |
4888425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 4872310 - 4872224
Alignment:
| Q |
70 |
ttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctcttggattttggatattcagaagacaaaaaggta |
156 |
Q |
| |
|
||||||||||| ||||||| || ||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4872310 |
ttgtaccacttattgcatcattttcaacattaattgcaatccttttgatttctcttggattttggatattcagaagacaaaaaggta |
4872224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 4792923 - 4792815
Alignment:
| Q |
51 |
tgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctcttggattttggatattcagaagacaaa |
150 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | ||||| ||| || ||||| | ||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
4792923 |
tgcaaaaagaagaacattgttgtaccaattgttgcatcactttcagcattaattataatcatattgatctctctcggattttggatattcaaaagacaaa |
4792824 |
T |
|
| Q |
151 |
aaggtactt |
159 |
Q |
| |
|
|||||||| |
|
|
| T |
4792823 |
taggtactt |
4792815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 4827861 - 4827726
Alignment:
| Q |
21 |
gacaatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgattt |
120 |
Q |
| |
|
|||||||| ||||||||||| | | || |||||||| |||||||||||||||||| || ||| ||| | |||| |||||||||||||| ||||| | |
|
|
| T |
4827861 |
gacaatcccgatctttgtataaagggctcatgcaaaaataagaacattgttgtaccaattattggatcactttcaggattagttgtaatcctcttgatct |
4827762 |
T |
|
| Q |
121 |
ctcttggattttggatattcagaagacaaaaaggta |
156 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |
|
|
| T |
4827761 |
ctcttgcattttggagattcagaagacaaaaaggta |
4827726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 4921352 - 4921217
Alignment:
| Q |
24 |
aatcctgatctttgtatgacagaatcctgcaaaaagaagaacattgttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctc |
123 |
Q |
| |
|
|||||||||||||||||||| | | | |||| |||||| || | |||||||||| ||||||| || || || ||| |||| ||||| |||||||||| |
|
|
| T |
4921352 |
aatcctgatctttgtatgacggcaccatgcagaaagaaaaatttaactgtaccacttattgcatcattttctgcattaattgttatcctattgatttctc |
4921253 |
T |
|
| Q |
124 |
ttggattttggatattcagaagacaaaaaggtactt |
159 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4921252 |
ttggattttggatattcagaagacagaaaggtactt |
4921217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 4899027 - 4898971
Alignment:
| Q |
103 |
ttgtaatccttttgatttctcttggattttggatattcagaagacaaaaaggtactt |
159 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4899027 |
ttgtaatgcttttgatttttcttggatattggatattcagaacacaaaaaggtactt |
4898971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 4774643 - 4774567
Alignment:
| Q |
70 |
ttgtaccacttgttgcatcgttctcagctttagttgtaatccttttgatttctcttggattttggatattcagaaga |
146 |
Q |
| |
|
||||||||||| | |||||||| ||||| | |||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
4774643 |
ttgtaccacttatagcatcgttttcagcaatgattgtaatcgtcttgatttctcttggattttggatattcaaaaga |
4774567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 21437807 - 21437747
Alignment:
| Q |
99 |
ttagttgtaatccttttgatttctcttggattttggatattcagaagacaaaaaggtactt |
159 |
Q |
| |
|
||||||||||| ||| ||||| ||||| || |||||||||||||| || ||||||||||| |
|
|
| T |
21437807 |
ttagttgtaatggtttcgatttttcttgtatgttggatattcagaacactaaaaggtactt |
21437747 |
T |
|
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