View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_low_19 (Length: 212)
Name: NF17520_low_19
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 21548507 - 21548437
Alignment:
| Q |
126 |
gtatactgcaataccacattttgattattttttcaacataacacgcaacgattgctatcaaatacaataat |
196 |
Q |
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| T |
21548507 |
gtatactgcaataccacattttgattattttttcaacataacatgcaacgattgctatcaaatacaataat |
21548437 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 21548560 - 21548525
Alignment:
| Q |
18 |
ataccaaatatctagaaaatagcacatagtatattt |
53 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
21548560 |
ataccaaacatctagaaaatagcacatagtatattt |
21548525 |
T |
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