View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_low_3 (Length: 614)
Name: NF17520_low_3
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Original strand, 45100185 - 45100787
Alignment:
| Q |
17 |
aaatctatagtttaatgtttaagaatctattacgttgagttgattcaagaggattcctcttatacagatttgagtaaactcacagatatcatcctatcat |
116 |
Q |
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| T |
45100185 |
aaatcgatggtttaatgtttaagaatctattacgttgagttgattcaagaggattcctcttatacagatttgagtaaactcacagatatcatcctatcat |
45100284 |
T |
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| Q |
117 |
aaacaattttatgggcagagttataaaatccacacagacaaacaaaaagatagtctatgacaacgcttcattagataggcattgttatattatcttcttt |
216 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45100285 |
aaacaattttatgggtaaagttataaaatccacacagacaaacaaaaagatagtctatgacaacgcttcattagataggcattgttatattatcttcttt |
45100384 |
T |
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| Q |
217 |
gacaatg----tctaagactacttatttactttacgcgctagtagagcctattcttttgcaacgtttacaatgcatatagcnnnnnnntgttgtcaatgg |
312 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45100385 |
gacaatgtgtttctaagagtacttatttactttacgtgctaggagagcctattcttttgcaacgtttacaatgcatatagcaaaaaaatgttgtcaatgg |
45100484 |
T |
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| Q |
313 |
ttgactttgacaatgttgatcaaagcttaaaagcattgtcaagggagcttaacaacacnnnnnnnngaagaagagcttaacaacacttatttcacatgaa |
412 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45100485 |
ttgactttgacaatgttgatcaaagctaaaaagcattgtcaagggagcttaacaacatttttttttgaagaagagcttaacaacacttatttcacatgaa |
45100584 |
T |
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| Q |
413 |
aaagttttgtcataacatacaataacacatgtataccaacgcttttaagcgttgttaaagtaggttaacatcaccgataac--nnnnnnnnnnaaggagt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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| T |
45100585 |
aaagttttgtcataacatacaataacacatgtataccaacgcttttaagcgttgttaaagtaggctaacatcatcgataactttttttctttcaaggagt |
45100684 |
T |
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| Q |
511 |
ggactggcttgccagtaagacgacagctannnnnnnnnnnnnnnnnnnnngtattctttcaagctattacttgcgacctgtcctccaataataacctaca |
610 |
Q |
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| T |
45100685 |
ggactggtttgccagtaagacgacaacta-tttttgtatatattttttttgtattctttcaggctattacttgcgacctgtcctccaataataacctaca |
45100783 |
T |
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| Q |
611 |
aatt |
614 |
Q |
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| T |
45100784 |
aatt |
45100787 |
T |
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