View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_low_4 (Length: 497)
Name: NF17520_low_4
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 259986 - 259758
Alignment:
| Q |
12 |
gagatgaagagataaatagatttaataaattctgggttattgattttagatctgaaacttcatctgaaaagatgaaaaggtttnnnnnnnnttatgggtt |
111 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
259986 |
gagatgaagagataaatacatttaataaattctgggttattgatttttgatctgaaacttcatctgaaaagatgaaaaggtttaaaaaaaattatgggtt |
259887 |
T |
|
| Q |
112 |
ttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcatacgaggaattagatgttgaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259886 |
ttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcatacgaggaattagatgttgaag |
259787 |
T |
|
| Q |
212 |
ccatggtacaattactaacaagaagaaga |
240 |
Q |
| |
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|||||||| |||||| ||||||||||||| |
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| T |
259786 |
ccatggtataattaccaacaagaagaaga |
259758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 266 - 481
Target Start/End: Complemental strand, 259544 - 259325
Alignment:
| Q |
266 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgacctcctgattcttactacctaagcaa |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
259544 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgaccccctaattcttactacctaagcaa |
259445 |
T |
|
| Q |
366 |
ttgcttgaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaa----taagttagtacttctatttact |
461 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
259444 |
ttgcttaaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaataattaagttagtacttctatttact |
259345 |
T |
|
| Q |
462 |
gaatagtggagtttgtgcat |
481 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
259344 |
gaataggggagtttgtgcat |
259325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 266 - 481
Target Start/End: Complemental strand, 27225416 - 27225197
Alignment:
| Q |
266 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgacctcctgattcttactacctaagcaa |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
27225416 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgaccccctaattcttactacctaagcaa |
27225317 |
T |
|
| Q |
366 |
ttgcttgaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaa----taagttagtacttctatttact |
461 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27225316 |
ttgcttaaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaataattaagttagtacttctatttact |
27225217 |
T |
|
| Q |
462 |
gaatagtggagtttgtgcat |
481 |
Q |
| |
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|||||| ||||||||||||| |
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|
| T |
27225216 |
gaataggggagtttgtgcat |
27225197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 27225857 - 27225630
Alignment:
| Q |
12 |
gagatgaagagataaatagatttaataaattctgggttattgattttagatctgaaacttcatctgaaaagatgaaaaggtttnnnnnnnnttatgggtt |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
27225857 |
gagatgaagagataaatacatttaataaattctgggttattgatttttgatctgaaacttcatctgaaaagatgaaaaggtttaaaaaaa-ttatgggtt |
27225759 |
T |
|
| Q |
112 |
ttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcatacgaggaattagatgttgaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27225758 |
ttattttagatctgaaacgtaattcaatccccttagaaacaaaccacgtcatctccacaaccatgctccacaaactcatacgaggaattagatgttgaag |
27225659 |
T |
|
| Q |
212 |
ccatggtacaattactaacaagaagaaga |
240 |
Q |
| |
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|||||||| |||||| ||||||||||||| |
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|
| T |
27225658 |
ccatggtataattaccaacaagaagaaga |
27225630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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