View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_low_5 (Length: 485)
Name: NF17520_low_5
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 4749737 - 4749268
Alignment:
| Q |
1 |
gatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatagtt |
100 |
Q |
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| T |
4749737 |
gatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatagtt |
4749638 |
T |
|
| Q |
101 |
ttgtttgttnnnnnnnnnnnncagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagt |
200 |
Q |
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| T |
4749637 |
ttgtttgttaaaaaaaaaaa-cagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagt |
4749539 |
T |
|
| Q |
201 |
gaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttc |
300 |
Q |
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| T |
4749538 |
gaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttc |
4749439 |
T |
|
| Q |
301 |
tcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttcattattattgtttctcctcttatgatccaccaagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4749438 |
tcaccctcgtcgtctctggcttccatcaacaactccatcaaatctttttttgtctgttgtttttcattattattgtttctcctcttatgatccaccaaac |
4749339 |
T |
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| Q |
401 |
ctttcaacagcttcaccaacttctttcgtgcctaaacacaataggannnnnnnaaatgtaactataaggtg |
471 |
Q |
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| T |
4749338 |
ctttcaacagcttcaccaacttctttcgtgcctaaacacaataggatttttttaaatgtaactataaggtg |
4749268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 166 - 440
Target Start/End: Complemental strand, 4758054 - 4757783
Alignment:
| Q |
166 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
265 |
Q |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
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| Q |
266 |
gaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttc |
365 |
Q |
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||||||||||||||||||||||||| |||||| || |||||| || ||| || |||||||||| || ||||||| ||| || | |||| | |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaacatcctaccctcttcatctttgacttccatcaataaatccatcatatcttttttcatc---ttttttac |
4757858 |
T |
|
| Q |
366 |
attattattgtttctcctcttatgatccaccaagcctttcaacagcttcaccaacttctttcgtgcctaaacaca |
440 |
Q |
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|||||||| || ||||| || |||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| |
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| T |
4757857 |
tttattattattcctccttttttgatccaccaaggcttgcaatagcttcatcaacttctttcttgcctaaacaca |
4757783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4758283 - 4758195
Alignment:
| Q |
1 |
gatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaag |
89 |
Q |
| |
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|||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |||| |||||||||||||||||||||||| |
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| T |
4758283 |
gatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtttccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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