View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17520_low_7 (Length: 420)

Name: NF17520_low_7
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17520_low_7
NF17520_low_7
[»] chr7 (11 HSPs)
chr7 (5-159)||(4793715-4793864)
chr7 (189-278)||(4793617-4793706)
chr7 (273-346)||(4793500-4793574)
chr7 (3-50)||(13557800-13557847)
chr7 (3-49)||(26329438-26329484)
chr7 (2-32)||(5235960-5235990)
chr7 (2-40)||(27945007-27945045)
chr7 (2-51)||(1885528-1885577)
chr7 (10-51)||(9778463-9778504)
chr7 (10-51)||(35861913-35861954)
chr7 (2-38)||(26733272-26733308)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-54)||(8750-8803)
[»] chr6 (11 HSPs)
chr6 (1-54)||(426568-426621)
chr6 (1-54)||(16766649-16766702)
chr6 (2-54)||(5732565-5732617)
chr6 (2-45)||(7625083-7625126)
chr6 (1-51)||(7938071-7938121)
chr6 (1-51)||(8777027-8777077)
chr6 (1-51)||(9107424-9107474)
chr6 (1-37)||(1532207-1532243)
chr6 (2-50)||(5000681-5000729)
chr6 (2-50)||(9027134-9027182)
chr6 (1-33)||(16833281-16833313)
[»] chr1 (4 HSPs)
chr1 (1-54)||(47989450-47989503)
chr1 (2-51)||(398820-398869)
chr1 (1-40)||(48040516-48040555)
chr1 (1-51)||(10577789-10577839)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-47)||(225322-225368)
[»] chr5 (10 HSPs)
chr5 (1-51)||(13287453-13287503)
chr5 (1-40)||(22013380-22013419)
chr5 (1-51)||(6401453-6401503)
chr5 (1-51)||(15382432-15382482)
chr5 (1-51)||(21522705-21522755)
chr5 (1-51)||(21533271-21533321)
chr5 (1-51)||(41995426-41995476)
chr5 (5-54)||(26205818-26205867)
chr5 (1-38)||(36642816-36642853)
chr5 (2-30)||(42488108-42488136)
[»] chr3 (8 HSPs)
chr3 (1-51)||(3164079-3164129)
chr3 (1-51)||(16000070-16000120)
chr3 (2-47)||(24205096-24205141)
chr3 (1-40)||(10335340-10335379)
chr3 (9-40)||(41961712-41961743)
chr3 (1-39)||(14829657-14829695)
chr3 (9-37)||(3610602-3610630)
chr3 (2-38)||(25064877-25064913)
[»] chr2 (5 HSPs)
chr2 (1-50)||(18054858-18054907)
chr2 (1-40)||(20539728-20539767)
chr2 (1-40)||(21624232-21624271)
chr2 (13-51)||(18276476-18276514)
chr2 (1-50)||(36756398-36756447)
[»] scaffold0475 (1 HSPs)
scaffold0475 (3-51)||(3271-3319)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-40)||(241560-241599)
[»] chr8 (7 HSPs)
chr8 (1-40)||(4673479-4673518)
chr8 (354-404)||(8638997-8639047)
chr8 (1-51)||(22651931-22651981)
chr8 (1-39)||(29510358-29510396)
chr8 (1-54)||(2572110-2572163)
chr8 (10-51)||(43737876-43737917)
chr8 (9-45)||(22197804-22197840)
[»] chr4 (6 HSPs)
chr4 (1-40)||(28084487-28084526)
chr4 (1-51)||(27706231-27706281)
chr4 (10-51)||(4157113-4157154)
chr4 (1-38)||(19482636-19482673)
chr4 (2-51)||(20633440-20633489)
chr4 (1-50)||(23293040-23293089)
[»] scaffold0122 (1 HSPs)
scaffold0122 (2-40)||(8632-8670)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-54)||(130434-130487)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-38)||(178873-178910)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-33)||(23393-23425)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 4793864 - 4793715
Alignment:
Q  5 tcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatgaacattaaacttatgtcttgcttctagttc-gtgggagaaggaggaaatt 103  Q
    |||||||||||||||||||||||||||||       |||| |||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  4793864 tcgacgtgtcagtgtctgtgtcgtgtccg-------agtccgtatccgtgaacattaaacttatgtcttgcttctggtttagtgggagaaggaggaaatt 4793772  T
Q  104 -gaaatcacttgcatagtatgcaacgaatctaaagggttggaacagtgttcccaata 159  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4793771 tgaaatcacttgcatagtatgcaacgaatctaaacggttggaacagtgttcccaata 4793715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 4793706 - 4793617
Alignment:
Q  189 cttctcaatgtaaaatgaacttgacttattctttctcttgcattctgctcatgtggcatctccatgtaacagtctcatcttttgttgaaa 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4793706 cttctctatgtaaaatgaacttgacttattctttctcttgcattctgctcatgtggcatctccatgtaacagtctcatcttttgttgaaa 4793617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 4793574 - 4793500
Alignment:
Q  273 ttgaaatatgctacatacacaatcaagtaaataacaattcatgtat-gggagaaaaaacggttcacttattagcc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4793574 ttgaaatatgctacatacacaatcaagtaaataacaattcatgtatggggagaaaaaacggttcacttattagcc 4793500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 13557800 - 13557847
Alignment:
Q  3 tgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  13557800 tgtcggcgtgtcagtgtctgtgtcatgtccggtgtccgtgtctgtatc 13557847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 26329438 - 26329484
Alignment:
Q  3 tgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtat 49  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  26329438 tgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtctgtat 26329484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 5235990 - 5235960
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtcc 32  Q
    |||||||||||||||||||||||||||||||    
T  5235990 gtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 27945045 - 27945007
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  27945045 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 27945007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 1885577 - 1885528
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| ||||| || || ||||||||||||||||||| ||||||||||    
T  1885577 gtgtcgatgtgtccgtatcagtgtcgtgtccggtgtccgtgtctgtatcc 1885528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 9778504 - 9778463
Alignment:
Q  10 gtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||    
T  9778504 gtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 9778463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 35861954 - 35861913
Alignment:
Q  10 gtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    |||| |||||||||||||||||||||||||| ||| ||||||    
T  35861954 gtgttagtgtctgtgtcgtgtccggtgtccgcgtccgtatcc 35861913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 26733308 - 26733272
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtc 38  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  26733308 gtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtc 26733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8803 - 8750
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||    
T  8803 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatg 8750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 426568 - 426621
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||||    
T  426568 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatg 426621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16766702 - 16766649
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||| ||||||||||||  |||||||||||||||||| ||| |||||||||    
T  16766702 tgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccatg 16766649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 5732565 - 5732617
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    |||||| ||||||||||||  |||||||||| ||||||| |||||||||||||    
T  5732565 gtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgtgtctgtatccatg 5732617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7625126 - 7625083
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtct 45  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||    
T  7625126 gtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgtct 7625083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7938121 - 7938071
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| ||||||||||||  |||||||||||||||||| ||| ||||||    
T  7938121 tgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 7938071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8777027 - 8777077
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||||||    
T  8777027 tgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatcc 8777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9107424 - 9107474
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| ||||| |||||| ||||||||||||||||||| ||| ||||||    
T  9107424 tgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagtatcc 9107474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1532243 - 1532207
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgt 37  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  1532243 tgtgtcgacgtgtcagtgtttgtgtcgtgttcggtgt 1532207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 5000681 - 5000729
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    |||||||||||||||| || ||||| ||||||||||||| || ||||||    
T  5000681 gtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtgtatgtatc 5000729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 9027182 - 9027134
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    |||||| |||||||||||| ||||||||||||| ||||| ||| |||||    
T  9027182 gtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtccgtatc 9027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16833313 - 16833281
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccg 33  Q
    ||||||| |||||||||||||||||||||||||    
T  16833313 tgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47989503 - 47989450
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  47989503 tgtgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtgtctgtatccatg 47989450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 398820 - 398869
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    |||||| |||||||||||| ||||||||||||||||||| ||| ||||||    
T  398820 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatcc 398869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48040516 - 48040555
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  48040516 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 48040555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10577789 - 10577839
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||| ||||| ||||||||||||||||||| ||| ||||||    
T  10577789 tgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 10577839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 225322 - 225368
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgt 47  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  225322 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgt 225368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13287453 - 13287503
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| ||||||    
T  13287453 tgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 13287503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22013419 - 22013380
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  22013419 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 22013380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6401503 - 6401453
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||| ||||| |||||| |||||||||||| ||||||||||    
T  6401503 tgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatcc 6401453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15382482 - 15382432
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| ||||||| |||| ||||||||||||||||||| ||| ||||||    
T  15382482 tgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatcc 15382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21522755 - 21522705
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||| ||||||||||||||| ||| ||| ||||||    
T  21522755 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21533321 - 21533271
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||| ||||||||||||||| ||| ||| ||||||    
T  21533321 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41995476 - 41995426
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||    
T  41995476 tgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgtccgtatcc 41995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 26205818 - 26205867
Alignment:
Q  5 tcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  26205818 tcgacgtgtcagtgtccatgtcatgtccggtgtccgtgtctgtgtccatg 26205867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36642816 - 36642853
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtc 38  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  36642816 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 36642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 42488108 - 42488136
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgt 30  Q
    |||||||||||||||||||||||||||||    
T  42488108 gtgtcgacgtgtcagtgtctgtgtcgtgt 42488136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3164079 - 3164129
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    |||||||||||| || |||| ||||||||||||||||||| ||||||||||    
T  3164079 tgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtctgtatcc 3164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16000070 - 16000120
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||| ||||||    
T  16000070 tgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatcc 16000120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24205096 - 24205141
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgt 47  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||    
T  24205096 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgt 24205141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10335340 - 10335379
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  10335340 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 10335379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 41961712 - 41961743
Alignment:
Q  9 cgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||||||||||||||||||||||||||||    
T  41961712 cgtgtcagtgtctgtgtcgtgtccggtgtccg 41961743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14829695 - 14829657
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtcc 39  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  14829695 tgtgtcggcgtgtcagtgtctgtgtcatgtccggtgtcc 14829657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 3610630 - 3610602
Alignment:
Q  9 cgtgtcagtgtctgtgtcgtgtccggtgt 37  Q
    |||||||||||||||||||||||||||||    
T  3610630 cgtgtcagtgtctgtgtcgtgtccggtgt 3610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 25064913 - 25064877
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtc 38  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  25064913 gtgtcggcgtgtcaatgtctgtgtcgtgtccggtgtc 25064877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18054858 - 18054907
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    |||||||||||||| |||||  |||||||||||||||||| |||||||||    
T  18054858 tgtgtcgacgtgtcggtgtccctgtcgtgtccggtgtccgtgtctgtatc 18054907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20539728 - 20539767
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  20539728 tgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccg 20539767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21624271 - 21624232
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  21624271 tgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccg 21624232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 18276514 - 18276476
Alignment:
Q  13 tcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  18276514 tcagtgtctgtatcgtgtccggtgtccgtgtctgtatcc 18276476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36756398 - 36756447
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    |||||||||||||||||||||||||||| |||| ||| || ||| |||||    
T  36756398 tgtgtcgacgtgtcagtgtctgtgtcgtatccgatgttcgtgtccgtatc 36756447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 3319 - 3271
Alignment:
Q  3 tgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||||||| || ||||||||||||||||||| |||| |||||    
T  3319 tgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgtgtctatatcc 3271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 241599 - 241560
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  241599 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 241560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4673479 - 4673518
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  4673479 tgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccg 4673518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 8638997 - 8639047
Alignment:
Q  354 tctatatatctttgaattctaaactttatttattctaatgttaggattgtg 404  Q
    |||||||||||||||||||||||||| | | |||| |||| ||||||||||    
T  8638997 tctatatatctttgaattctaaacttaactcattcaaatgctaggattgtg 8639047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22651981 - 22651931
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||| |||||||||||| ||||||||||||||||| | ||| ||||||    
T  22651981 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatcc 22651931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29510358 - 29510396
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtcc 39  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  29510358 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2572110 - 2572163
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    |||||||||||||| || || ||||||||||| ||||||| ||| |||||||||    
T  2572110 tgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgtccgtatccatg 2572163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 43737876 - 43737917
Alignment:
Q  10 gtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  43737876 gtgtcggtgtccgtgtcgtgtccggtgtccgtgtctgtatcc 43737917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 22197804 - 22197840
Alignment:
Q  9 cgtgtcagtgtctgtgtcgtgtccggtgtccgagtct 45  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  22197804 cgtgttagtgtctgtgtcgtgtccggtgtccgtgtct 22197840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28084526 - 28084487
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  28084526 tgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccg 28084487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27706231 - 27706281
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||||||||||||  ||||||||| |||||||| ||| ||||||    
T  27706231 tgtgtcgacgtgtcagtgtccctgtcgtgtctggtgtccgtgtccgtatcc 27706281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 4157154 - 4157113
Alignment:
Q  10 gtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  4157154 gtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatcc 4157113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19482673 - 19482636
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtc 38  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  19482673 tgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtc 19482636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20633489 - 20633440
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatcc 51  Q
    ||||||||||||||||||| || ||||||| |||||||| ||| ||||||    
T  20633489 gtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatcc 20633440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23293040 - 23293089
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatc 50  Q
    ||||||| ||||||| |||| ||||||||||||||||||| ||| |||||    
T  23293040 tgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatc 23293089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 8670 - 8632
Alignment:
Q  2 gtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccg 40  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  8670 gtgtcgacgtgtcagtgtccatgtcgtgtccggtgtccg 8632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 130487 - 130434
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtccgagtctgtatccatg 54  Q
    ||||||| | ||||| |||| ||||||||||||||||||| ||| |||||||||    
T  130487 tgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccatg 130434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 178873 - 178910
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccggtgtc 38  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  178873 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23425 - 23393
Alignment:
Q  1 tgtgtcgacgtgtcagtgtctgtgtcgtgtccg 33  Q
    ||||||| |||||||||||||||||||||||||    
T  23425 tgtgtcggcgtgtcagtgtctgtgtcgtgtccg 23393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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