View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17520_low_9 (Length: 394)
Name: NF17520_low_9
Description: NF17520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17520_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 28465817 - 28465453
Alignment:
| Q |
13 |
aatatcaccccgagcaatgttaaaatgacaaatatagagcttcccaaaagaactgaaatcacaatcaccaaagtatcatgatctttcttcacctttgaga |
112 |
Q |
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| T |
28465817 |
aatatcaccccgagcaatgttaaaatgacaaatatagagcttcccaaaagaactgaaatcacaatgaccaaagtatcatgatctttcttcacttttgaga |
28465718 |
T |
|
| Q |
113 |
aggaggacaaatgatcacttttcatcaatttcatgattgaaataccatttactgccggatcatttctaccataagatagtgggagcttctttttccagca |
212 |
Q |
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| T |
28465717 |
aggaggacaaatgatcacttttcatcaatttcatgattgaaataccatttaccgccggatcatttctaccataagatagtgggagcttctttttccagca |
28465618 |
T |
|
| Q |
213 |
ggaacttcggacttggtcaaaatgaaccaaaacacataagcaatcttgcaaacatgattccttacattcttgtaaattagatggagatattttttcataa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28465617 |
ggaacttcggacttggtcaaaatgaaccaaaacacataagcaatcttgcaaacatgattccttacattcttgtaaattagatggagatattttttcataa |
28465518 |
T |
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| Q |
313 |
tcagatccaggccaatcagtatttggtaactccttcattgtatatagattatcttgtgaactcaa |
377 |
Q |
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| T |
28465517 |
tcagatccaggccaatcagtatttggtaactccttcattgtatatagattatcttgtgaactcaa |
28465453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 28487578 - 28487227
Alignment:
| Q |
13 |
aatatcaccccgagcaatgttaaaatgacaaatatagagcttcccaaaagaactgaaatcacaatcaccaaagtatcatgatctttcttcacctttgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||| | |
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| T |
28487578 |
aatatcaccccgagcaatgttaaaatgacaaacatagagcttcccaaaagaactgaaatcacaatgaccaaagtatcatgctctttcttctcttttgaca |
28487479 |
T |
|
| Q |
113 |
aggaggacaaatgatcacttttcatcaatttcatgattgaaataccatttactgccggatcatttctaccataagatagtgggagcttctttttccagca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28487478 |
aggaggacaaatgatcacttttcatcaatttcatgatagaaataccttttaccgccggatcatttctaccataagatagtgggagcttctttttccaaca |
28487379 |
T |
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| Q |
213 |
ggaacttcggacttggtcaaaatgaaccaaaacacataagcaatcttgcaaacatgattccttacattcttgtaaattagatggagatattttttcataa |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
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| T |
28487378 |
agaac------cttggtcaaaatgaaccaaaacacataagcaatcttgcaaacatgattccttacattcttgtaaattagatggaattctaaattcataa |
28487285 |
T |
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| Q |
313 |
tcagatccaggccaatcagtatttggtaactccttcattgtatatagattatcttgtg |
370 |
Q |
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|||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
28487284 |
tcagatgcaggccaatcagtatttagtaaatccttcattgtatatagattatcttgtg |
28487227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 28444959 - 28444620
Alignment:
| Q |
25 |
agcaatgttaaaatgacaaatatagagcttcccaaaagaactgaaatcacaatcaccaaagtatcatgatctttcttcacctttgagaaggagga----- |
119 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| | ||||| || | ||| |
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| T |
28444959 |
agcaatgttaaaatgacaaacaccgagcttcccaaaagaaccgaaatcacaatgatcaaagtatcatggtctttcttcccatttgacaatgcggataaag |
28444860 |
T |
|
| Q |
120 |
----caaatgatcacttttcatcaatttcatgattgaaataccatttactgccggatcatttctaccataagatagtgggagcttctttttccagcagga |
215 |
Q |
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|||| ||||| | ||||||||||||||||||||||| || || ||| || |||||||||| ||||| || |||||||||||||| ||||||||||| |
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| T |
28444859 |
atgacaaaggatcattgttcatcaatttcatgattgaaattcctttaactccctgatcatttctcccatacgagagtgggagcttcttcttccagcagga |
28444760 |
T |
|
| Q |
216 |
acttcggacttggtcaaaatgaaccaaaacacataagcaatcttgcaaacatgattccttacattcttgtaaattagatggagatattttttcataatca |
315 |
Q |
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|||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||| ||||||||||| |
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| T |
28444759 |
actt------tggttgaaagaaaccaaaacacataagcaatctcgcaaacatgattccttacattcttgtagactagatgggcttattatttcataatca |
28444666 |
T |
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| Q |
316 |
gatccaggccaatcagtatttggtaactccttcattgtatatagat |
361 |
Q |
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||| | ||||||||||||||||| || ||||||||||||||||||| |
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| T |
28444665 |
gattctggccaatcagtatttggcaattccttcattgtatatagat |
28444620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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