View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17521_high_1 (Length: 636)
Name: NF17521_high_1
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_high_1 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 6555381 - 6555999
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555381 |
gctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
6555480 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaatggcggacgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555481 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaatggcggacgag |
6555580 |
T |
|
| Q |
201 |
aagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6555581 |
aagaaatggctgaaagtaacctgttggttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttcc |
6555680 |
T |
|
| Q |
301 |
aaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttct |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555681 |
aaattggctaaggggttgtcatttacccaacttagtatctcttgaacttaagggttgtaagttatgttcctgtttgccaacacttggacaactcccttct |
6555780 |
T |
|
| Q |
401 |
cttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaat |
500 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555781 |
ctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaat |
6555880 |
T |
|
| Q |
501 |
atttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaag |
600 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
6555881 |
atttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaag |
6555980 |
T |
|
| Q |
601 |
agtattgcctcaacatctt |
619 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6555981 |
agtattgcctcaacatctt |
6555999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 6527815 - 6528414
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527815 |
gctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
6527914 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaatggcggacgag |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6527915 |
catattaaaggcttgggtaatgtcagtgatactgcagatgctgccccattaaatttgaaagatatagaagaattgcatactgagttcaatggcggaagag |
6528014 |
T |
|
| Q |
201 |
aagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttcc |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6528015 |
aagaaatggctgaaagcaacctgttagtcttggaggctatacaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttcc |
6528114 |
T |
|
| Q |
301 |
aaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
6528115 |
aaattggctaaggggtagtcatttacccaacttagtatctcttcaactgaatggttgtgggttatgttcctgtttgccaccccttggacaactcccttct |
6528214 |
T |
|
| Q |
401 |
cttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaat |
500 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6528215 |
cttaagaaactttccgtttatgattgtgaaggaataaagatcattgatgaagatttttatgacaataattcaacaattgttccattcaagtcccttcaat |
6528314 |
T |
|
| Q |
501 |
atttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaag |
600 |
Q |
| |
|
|| || ||||| | ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||| ||||| | ||||||||||| |
|
|
| T |
6528315 |
tttcgatatttgagaatatggtgaactgggagaaatggatatgtctaaggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaag |
6528414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 6521075 - 6521668
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521075 |
gctaagtaatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
6521174 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaatggcggacgag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
6521175 |
catattaaagggttgggtaatgttagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatacagagttcaatggcggaagag |
6521274 |
T |
|
| Q |
201 |
aagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttcc |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6521275 |
aagaaatggctgaaagcaacctgttagtcttggaggctatacaatcaaatagcaacttgaagaagctcaacatcacacgctacaaaggtagtagatttcc |
6521374 |
T |
|
| Q |
301 |
aaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttct |
400 |
Q |
| |
|
|||||||| | | | |||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521375 |
aaattggc---gtgattgtcatttacccaacttagtatctcttcaactgaaggattgtag---atgttcctgtttgccaacacttggacaactcccttct |
6521468 |
T |
|
| Q |
401 |
cttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaat |
500 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6521469 |
ctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagatttttatggcaataattcaacaattgttccattcaagtcccttcaat |
6521568 |
T |
|
| Q |
501 |
atttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaag |
600 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
6521569 |
atttgagatttcaggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaag |
6521668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 6735055 - 6734472
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6735055 |
gctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccagcttcatggaacaatt |
6734956 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatactgagttcaatg |
191 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||| |
|
|
| T |
6734955 |
catattaaagggctgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaattacaaatggagttcaatg |
6734856 |
T |
|
| Q |
192 |
gcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtag |
291 |
Q |
| |
|
||||| |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734855 |
gcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtag |
6734756 |
T |
|
| Q |
292 |
tagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
6734755 |
tagatttccaaattggctaaggggtagtcatttacgcaacttagtatctcttgaactgaatggttgtag---atgttcctgtttgccaatacttggacaa |
6734659 |
T |
|
| Q |
392 |
ctcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagt |
491 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734658 |
ctcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagt |
6734559 |
T |
|
| Q |
492 |
cccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataa |
578 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
6734558 |
cccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctttgcttatagagctttctataa |
6734472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 8453755 - 8453133
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
|||||| |||||||| | | ||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
8453755 |
gctaaacaatcttcaaagcttgtcatattttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaaccatcttcatggagcaatt |
8453656 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatactgagttcaatg |
191 |
Q |
| |
|
||||| |||||||||||||||| || ||| ||||||| |||| || ||||||||||||||| ||||||||||||||| |||| ||| |
|
|
| T |
8453655 |
gatattgaagggttgggtaatgttagcgatcttgcagattctgctactgtaaatttgaaagatacgaaatatttagaagaattacatatgaagtttgatg |
8453556 |
T |
|
| Q |
192 |
gcggacgagaaga------------aatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacaca |
279 |
Q |
| |
|
||||| ||||||| |||||||||||| || ||| ||| ||||||||||| |||||||||| |||||||||| ||| | |||| || | |
|
|
| T |
8453555 |
gcggaagagaagaaatggatgagtcaatggctgaaagcaatgtgtcagtcttggaggctctccaaccaaatagaaacttgaagaggcttaccatctcaaa |
8453456 |
T |
|
| Q |
280 |
ctacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgcca |
379 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||||||||||| || || |||||| |||||||| | |||||| |
|
|
| T |
8453455 |
atacaaaggtaatagctttccaaattggataaggggttatcatttaccaaacttagtatctcttaatctacagttttgtggattatgttctttgttgcca |
8453356 |
T |
|
| Q |
380 |
acacttggacaactcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattg |
479 |
Q |
| |
|
||||||| |||||| | ||| ||| ||||| |||| || ||||| |||||||||||||| | |||||||||||| | || || ||||| || || |
|
|
| T |
8453355 |
ccacttgggacactcccctttctcaagatgctttctatttcagactgtgatggaataaagatcataggtgaagagttttacgacagtagttcaataaatg |
8453256 |
T |
|
| Q |
480 |
ttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatg---tgtaaggtttcctctgcttaaagagctttatat |
576 |
Q |
| |
|
| | |||| ||| |||||| ||||| ||||| | | ||| ||| |||||||||||| | || || | |||||||| ||||||||||||||||||| |
|
|
| T |
8453255 |
tgctgttcaggtctcttgaagttttgaaatttgagaagatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaagagctttatat |
8453156 |
T |
|
| Q |
577 |
aagtgattgttccaaattgaaaa |
599 |
Q |
| |
|
||| || ||| |||||||||||| |
|
|
| T |
8453155 |
aagagaatgtcccaaattgaaaa |
8453133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 233 - 600
Target Start/End: Complemental strand, 6946138 - 6945768
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
332 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| | |||| |
|
|
| T |
6946138 |
gaggctcttcaaccaaagagcaacttgaagaagctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaact |
6946039 |
T |
|
| Q |
333 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
432 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||| ||| |||| ||||| || |||| ||||| ||||| |||| |||| | ||| | || |
|
|
| T |
6946038 |
tagtatctcttaaactgaaggactgtgtactatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtaacgg |
6945939 |
T |
|
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
532 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| | |||||| |||||| |||| |||||||||| ||||| ||| | | |||||||||| |||||| |
|
|
| T |
6945938 |
aataaagatcatcggcgaagagttttacaacaatagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggag |
6945839 |
T |
|
| Q |
533 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaag |
600 |
Q |
| |
|
|||||| | || || |||||||||| |||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
6945838 |
gaatggttttgtcctgaaaggtttcctttgcttaaagagcttactataagaaattgtcccaaattgaaaag |
6945768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 480 - 578
Target Start/End: Original strand, 6781093 - 6781191
Alignment:
| Q |
480 |
ttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataa |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
6781093 |
ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctttgcttatagagctttctataa |
6781191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 233 - 578
Target Start/End: Complemental strand, 8470427 - 8470079
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
332 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | ||| ||||| |||| |||||||||| || |||||||| ||| |||||||| |||||||||| |||| |
|
|
| T |
8470427 |
gaggctcttcaaccaaataacaacttgaataggctttacatctcacaatacaaaggtaaaagctttccaaagtggataaggggttgtcatttaccaaact |
8470328 |
T |
|
| Q |
333 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
432 |
Q |
| |
|
|||||||||||||| | || | ||||| | |||| | ||||||| |||||||||| ||||| | ||| ||||| ||| | || | ||| ||| | || |
|
|
| T |
8470327 |
tagtatctcttaaattacagagctgtggatcatgtctccatttgccaccacttggacagctcccgtgtctcaaggagcttgctatctgtgactgtcatgg |
8470228 |
T |
|
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
532 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||| |||||||||| |||||| ||| |||||||||| ||||| ||||| | | ||| || |||||| |
|
|
| T |
8470227 |
aataaagataattggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggag |
8470128 |
T |
|
| Q |
533 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatataa |
578 |
Q |
| |
|
|||||| | || || | |||||||| ||||||||||||||| ||||| |
|
|
| T |
8470127 |
gaatggttgtgtcttgaagggtttcctttgcttaaagagctttctataa |
8470079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 230 - 499
Target Start/End: Original strand, 6481145 - 6481414
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
||||||||||| |||||||||| | ||| |||| ||| | |||| |||| || | ||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6481145 |
ttggaggctcttcaaccaaatagaagcttaaagaggcttagcatctcacaatatagaggtaatagatttccaaattggataaggggttgtcatttaccca |
6481244 |
T |
|
| Q |
330 |
acttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtga |
429 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||| ||||||| ||||||| |||||||| ||||| | ||| ||||| |||| | ||| | |
|
|
| T |
6481245 |
acttagtatctcttcaaatgcgtcactgtggattatgttctcatttgccaccacttgggcaactcccctctctcagggagctttctatttcaaactgtaa |
6481344 |
T |
|
| Q |
430 |
aggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
499 |
Q |
| |
|
| ||||||||||||| | ||||||||| ||||| |||||||||| ||||| | |||||| ||| |||||| |
|
|
| T |
6481345 |
aagaataaagatcatcggtgaagagttatatggaaataattcaaaaattgatgcattcaggtctcttgaa |
6481414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 578
Target Start/End: Original strand, 6795783 - 6796125
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
332 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||| | |||| || | |||||||||| | | |||||||||||| |||| ||||||| |||||| |
|
|
| T |
6795783 |
gaggctcttcaaccgaatagcaacttgaaaaggcttaccatctcagaatacaaaggtaatggctttccaaattggataag------tcatttatccaact |
6795876 |
T |
|
| Q |
333 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
432 |
Q |
| |
|
||||||||||| |||| | | | ||| ||||||||| ||||||| |||| || || ||||| ||||| ||||| |||||||||| |||||| || |
|
|
| T |
6795877 |
tagtatctcttcaactgcaagactatggattatgttccgatttgccagcactagggcagctcccctctctcaaggacctttccatttcaagatgtgacgg |
6795976 |
T |
|
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
532 |
Q |
| |
|
||||| |||||||| |||||| ||||| ||||| |||||||| |||| | |||| ||||||||| ||||| ||||| ||| |||| ||| |||||| |
|
|
| T |
6795977 |
aataatgatcattggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggag |
6796076 |
T |
|
| Q |
533 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatataa |
578 |
Q |
| |
|
|||||| | || || | |||||||| ||||||||||||||||||||| |
|
|
| T |
6796077 |
gaatggttttgtcttgaagggtttcctttgcttaaagagctttatataa |
6796125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 6840067 - 6840182
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
332 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
6840067 |
gaggctcttcaaccaaatagcaacttggagaagctcaacataaaacactacaaaggtaatagctttccaagttggctaagggcttgtcatttatccaact |
6840166 |
T |
|
| Q |
333 |
tagtatctcttaaact |
348 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
6840167 |
tagtatctcttcaact |
6840182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 230 - 499
Target Start/End: Original strand, 8570114 - 8570383
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||| ||||||| ||||||| || ||||| |||||||||||| ||| |||| || |||||||| |
|
|
| T |
8570114 |
ttggatgctcttcaaccaaatagcaacttgaagaggctcaccatcacatactacaatggcagtagctttccaaattggttaatgggttttcttttaccca |
8570213 |
T |
|
| Q |
330 |
acttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtga |
429 |
Q |
| |
|
||||||||||||||||||| | ||| | ||||||||| ||||| ||||||| || ||||| | ||| ||||| ||||| |||| | ||| | |
|
|
| T |
8570214 |
acttagtatctcttaaactacaccagtgtagattatgttccatgttgccgccacttgggcagctcccctatctcaaggagctttctatttcatattgtta |
8570313 |
T |
|
| Q |
430 |
aggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
499 |
Q |
| |
|
|| ||| | ||||||| |||||||||| ||||||| |||||||||| |||| |||| |||||||||| |
|
|
| T |
8570314 |
tggtatagaaatcattggcaaagagttttacggcaatagttcaacaattattccgttcaggtcccttgaa |
8570383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 6946366 - 6946248
Alignment:
| Q |
26 |
tattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgtca |
125 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| || || |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
6946366 |
tattttattgtggaagagcagaatgagtctgatcttaaggagttggggaaactaaaccatcttcatggaacaattgatattaaagggttgggtaatgtga |
6946267 |
T |
|
| Q |
126 |
gtgatactgcagatgctgc |
144 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
6946266 |
ttgatcctgcagatgctgc |
6946248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 499
Target Start/End: Complemental strand, 7586738 - 7586472
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
332 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| | |||| ||||||||||||||| ||| ||| |||||||| | |||||| || |||||||||||| |
|
|
| T |
7586738 |
gaggctcttcaaccaaatagcagcttgaagaggcttatcatctcacactacaaaggtaataggtttgcaaattggatgaggggttgtgatttacccaact |
7586639 |
T |
|
| Q |
333 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
432 |
Q |
| |
|
|||| || ||| ||| || |||| ||||||||| |||||| |||||||||||||||||| ||| || || |||| |||| | ||||| |
|
|
| T |
7586638 |
tagtttcaattagactaaatctctgtgctttatgttccgagttgccaccacttggacaactcccttgtctcaaagagatttcaatttcaggctgtgataa |
7586539 |
T |
|
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
499 |
Q |
| |
|
||||| |||||| | |||| ||||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
7586538 |
aataaggatcatagggaaagaattttatggcaataattccacaaatgttccattcagatcccttgaa |
7586472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 6729885 - 6730003
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6729885 |
ttggaggctctacaaccaaatagaaacttgaagtgacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6729984 |
T |
|
| Q |
330 |
acttagtatctcttaaact |
348 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6729985 |
acttagtatctcttgaact |
6730003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 6449957 - 6450075
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6449957 |
ttggaggctctacaaccaaatagaaacctaaagagacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6450056 |
T |
|
| Q |
330 |
acttagtatctcttaaact |
348 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6450057 |
acttagtatctcttgaact |
6450075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 512
Target Start/End: Complemental strand, 5279381 - 5279250
Alignment:
| Q |
381 |
cacttggacaactcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgt |
480 |
Q |
| |
|
||||||| || || || ||||||||||| ||||| |||| |||||||| |||||| |||| || | |||||||||||||||| |||||||| ||| ||| |
|
|
| T |
5279381 |
cacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagttttatggctataattcatcaactgt |
5279282 |
T |
|
| Q |
481 |
tccattcaagtcccttgaatatttgagatttg |
512 |
Q |
| |
|
||||||| ||||||||| |||||| ||||| |
|
|
| T |
5279281 |
tccattcgcttcccttgaaaatttgaaatttg |
5279250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 560 - 619
Target Start/End: Complemental strand, 6734355 - 6734296
Alignment:
| Q |
560 |
cttaaagagctttatataagtgattgttccaaattgaaaagagtattgcctcaacatctt |
619 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
6734355 |
cttaaagagctttatataagtcattgttccaaattcaaaagagtattgcctcaacttctt |
6734296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 560 - 619
Target Start/End: Original strand, 6781308 - 6781367
Alignment:
| Q |
560 |
cttaaagagctttatataagtgattgttccaaattgaaaagagtattgcctcaacatctt |
619 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
6781308 |
cttaaagagctttatataagtcattgttccaaattcaaaagagtattgcctcaacttctt |
6781367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 6486191 - 6486270
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaag |
312 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| ||||||||| |
|
|
| T |
6486191 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaag |
6486270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 6932419 - 6932336
Alignment:
| Q |
233 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggt |
316 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| |||||||| |||| |
|
|
| T |
6932419 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaaagggt |
6932336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 486
Target Start/End: Complemental strand, 5262565 - 5262400
Alignment:
| Q |
321 |
atttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccattta |
420 |
Q |
| |
|
|||||| |||||| ||||| ||| |||| || | ||||| || |||||| | |||||| ||||||| | || || |||||||| || ||||| |||| |
|
|
| T |
5262565 |
atttactcaacttggtatcccttgaactgaatagatgtggattttgttcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttc |
5262466 |
T |
|
| Q |
421 |
tgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccatt |
486 |
Q |
| |
|
|||||| | |||||| ||||||| | |||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
5262465 |
agaatgttatggaatagagatcatcggtgaagagttttatggctataattcatcaactgttccatt |
5262400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 8588778 - 8588694
Alignment:
| Q |
80 |
aaccatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
164 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8588778 |
aaccatcttcatgggaaaattcatataaaaggtttgggtaatgtaattgatcctgcagatgctgtgacagccaatttgaaagata |
8588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6480895 - 6480994
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
|||||| | |||||| || ||| | |||||| ||||||||| | |||| ||||||||||||||| |||| |||||| |||||||||||||||| |||| |
|
|
| T |
6480895 |
gctaaacagtcttcaaacactgccttattttgttgtggaagagaaaaatggatctgatctcaaagagttggaaaaactaaaccatcttcatggaaaaatt |
6480994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 8588607 - 8588500
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||| | |||| || | |||||||| | ||| |||||||||||| || |||| |||||||| |
|
|
| T |
8588607 |
ttggaggctcttcaaccaaatagaaacttgaagaggcttaccatctcaaaatacaaaggcaataggtttccaaattggata------agtcgtttaccca |
8588514 |
T |
|
| Q |
330 |
acttagtatctctt |
343 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8588513 |
acttagtatctctt |
8588500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 6486361 - 6486440
Alignment:
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttg |
512 |
Q |
| |
|
|||||||||||| |||||| ||||| | |||||||||||||||| ||||||| | |||||||||| ||||| ||||| |
|
|
| T |
6486361 |
aataaagatcatcagtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttg |
6486440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 600
Target Start/End: Original strand, 6730088 - 6730258
Alignment:
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
532 |
Q |
| |
|
|||||||||||| | ||||||| ||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||| | | ||| || |||||| |
|
|
| T |
6730088 |
aataaagatcatcggcaaagagttctatggaaataattcaataattgttccattcaggtctcttgaagtattgaaatttgagcaattggagaattgggag |
6730187 |
T |
|
| Q |
533 |
gaatggatatgtgt--aag-gtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaag |
600 |
Q |
| |
|
|||||| ||| | | ||| ||||||||| |||||||||||| | ||||| ||||| ||||| ||||||| |
|
|
| T |
6730188 |
gaatggttatttattgaagagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaag |
6730258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 6898912 - 6898849
Alignment:
| Q |
279 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctct |
342 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
6898912 |
actacagaggcagtagatttccaaattggcttggggttcatcatttacccaatttagtatctct |
6898849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 615
Target Start/End: Complemental strand, 8588479 - 8588294
Alignment:
| Q |
433 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
532 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||| ||||||||||||||||||| ||| |||||| |||| |||| |||| ||| |||||| |
|
|
| T |
8588479 |
aataaagatcattggtgccgacttttacggaaataactcaacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggag |
8588380 |
T |
|
| Q |
533 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatataagtgattgttccaaattgaaaagagtattgcctcaaca |
615 |
Q |
| |
|
||||||||||| | | |||||||| |||||||| |||| | ||||||||| ||| | |||||||||| | ||||||||||| |
|
|
| T |
8588379 |
gaatggatatgccttcaagggtttcctttgcttaaaaagctatttataagtgaatgtcctgaattgaaaagggctttgcctcaaca |
8588294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 596
Target Start/End: Original strand, 4390321 - 4390442
Alignment:
| Q |
478 |
tgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatgtgt--aaggttt-cctctgcttaaagagctttat |
574 |
Q |
| |
|
||||||||||| || ||||||| |||| |||||| ||| ||| ||| ||| |||||||| ||||||| ||||||| ||| ||||||||||||||| | |
|
|
| T |
4390321 |
tgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttct |
4390420 |
T |
|
| Q |
575 |
ataagtgattgttccaaattga |
596 |
Q |
| |
|
||| || ||||| | ||||||| |
|
|
| T |
4390421 |
atacgtaattgtccaaaattga |
4390442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 6141159 - 6141046
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
||||||||||| |||||||||| ||| | | || ||||| ||||| |||||| ||||||||| ||||| |||||||| ||| | |||| |||||| |
|
|
| T |
6141159 |
ttggaggctcttcaaccaaatagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctaccca |
6141060 |
T |
|
| Q |
330 |
acttagtatctctt |
343 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6141059 |
atttagtatctctt |
6141046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 6167764 - 6167651
Alignment:
| Q |
230 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
329 |
Q |
| |
|
||||||||||| |||||||||| || | | || ||||| ||||| |||||| ||||||||| |||||||||||||| ||| | |||| |||||| |
|
|
| T |
6167764 |
ttggaggctcttcaaccaaatagaaatctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatctaccca |
6167665 |
T |
|
| Q |
330 |
acttagtatctctt |
343 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6167664 |
atttagtatctctt |
6167651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 6450158 - 6450215
Alignment:
| Q |
431 |
ggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattca |
488 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
6450158 |
ggaataaagatcatcggcaaagagttctatggaaataattcaataattgttccattca |
6450215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 13271758 - 13271822
Alignment:
| Q |
279 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
343 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||| ||||||| |||||||||||| |
|
|
| T |
13271758 |
actacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctctt |
13271822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 8420 - 9005
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8420 |
gctaaataatcttcagaccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
8519 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatactgagttcaatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| || | |||||||||| |
|
|
| T |
8520 |
catattaaagggttgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaatttcaaatggagttcaatg |
8619 |
T |
|
| Q |
192 |
gcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtag |
291 |
Q |
| |
|
||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8620 |
gcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctttacaaccaaatagcaacttgaagaagctcaacatcacatgctacaaaggtag |
8719 |
T |
|
| Q |
292 |
tagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaa |
391 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8720 |
tagctttccaaattggctaaggggtagtcatttaccgaacttagtatctcttcaactgaagggttgtgggttatgttcctgtttgccagcacttggacaa |
8819 |
T |
|
| Q |
392 |
ctcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagt |
491 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8820 |
ctcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagaattttatggcaataattcaacaattgttccattcaagt |
8919 |
T |
|
| Q |
492 |
cccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
577 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8920 |
cccttgaatatttgagatttgtggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
9005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 619
Target Start/End: Original strand, 9123 - 9182
Alignment:
| Q |
560 |
cttaaagagctttatataagtgattgttccaaattgaaaagagtattgcctcaacatctt |
619 |
Q |
| |
|
||||||||||||| |||| | ||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
9123 |
cttaaagagctttctatatggtattgttctaaattcaaaagggtattgcctcaacatctt |
9182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 2623685 - 2623847
Alignment:
| Q |
1 |
gctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
100 |
Q |
| |
|
|||||| |||||||| | | ||| ||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
2623685 |
gctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaaagagttggcaaaacaaaaccat-ttcatggaacaatt |
2623783 |
T |
|
| Q |
101 |
catattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
164 |
Q |
| |
|
|||||| |||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
2623784 |
catattgaaggcttggataatgtcagcgatcttgcagatgctgctacagtaaatttgaaagata |
2623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 244 - 505
Target Start/End: Original strand, 6574499 - 6574760
Alignment:
| Q |
244 |
accaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
343 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||| | ||||||| || || || |||||||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6574499 |
accaaatagcaacctacagaggctcaccatcaaatactacaatggcagcagctttccaaattggctaaggtgttctcatttacctaacttagtatctctt |
6574598 |
T |
|
| Q |
344 |
aaacttaagggttgtgggttatgtt-cctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatc |
442 |
Q |
| |
|
| || || |||||| || |||| ||||||| || |||||||||| ||||| | ||| ||||| |||| ||||| | ||| | |||||||||||| |
|
|
| T |
6574599 |
atcctgcagaattgtggattttgttccctgttt-ccgccacttggacagctcccatgtctcaaggagcttttcatttcaggttgtaatggaataaagatc |
6574697 |
T |
|
| Q |
443 |
attgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttg |
505 |
Q |
| |
|
|| | ||||||||| || ||| || ||||||| | ||||| |||| ||||||||||| |||| |
|
|
| T |
6574698 |
atcggtgaagagttctacggcgattgttcaacattagttccgttcaggtcccttgaatttttg |
6574760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 296 - 464
Target Start/End: Complemental strand, 977 - 809
Alignment:
| Q |
296 |
tttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcc |
395 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||| |||| | ||||| ||||||||| ||| ||| ||||||| || || | |
|
|
| T |
977 |
tttccaaattggataacaggttgtcatttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttc |
878 |
T |
|
| Q |
396 |
cttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggca |
464 |
Q |
| |
|
||||||| ||| | ||||| |||| | ||||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
877 |
cttctctcaagaatctttctatttcatattgtgatggaataaagatcattggtgaagagattcatggca |
809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 35141574 - 35141634
Alignment:
| Q |
279 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatc |
339 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
35141574 |
actacagaggtagtagctttccaaattggcttggggatcatcatttacccaatttagtatc |
35141634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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