View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_high_12 (Length: 389)
Name: NF17521_high_12
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 368
Target Start/End: Complemental strand, 7804615 - 7804253
Alignment:
| Q |
3 |
aaaaagtgtaaaaaagagatcgagtgagtgagtgaatctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatcta |
102 |
Q |
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| T |
7804615 |
aaaaagtgtaacaaagagatcgagtgagtgagtgaatctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatcta |
7804516 |
T |
|
| Q |
103 |
aacacatgaatttttaatgtagaagctcaacattactttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttga |
201 |
Q |
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| T |
7804515 |
aacacgtgaatttcttatgtagaagttcaacattattttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttga |
7804416 |
T |
|
| Q |
202 |
attacattttcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttnnnnnnnctttaa |
301 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
7804415 |
attacattctcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttaaaaaaacttaaa |
7804316 |
T |
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| Q |
302 |
aggaatttaatacaccacttatagtgattaattatgtaagtttatgagatatatgaaagaacattat |
368 |
Q |
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||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
7804315 |
aggaatttaatgcaccacttatagtg----attatgtaagtttctgagatatatgaaagaacattat |
7804253 |
T |
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