View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_high_14 (Length: 369)
Name: NF17521_high_14
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 41668552 - 41668357
Alignment:
| Q |
1 |
attagaaacaaacaaaaattaacatgcttctaataattttgtaaaggattgatatcaatcactctcgtagtcacttgaccagaaggaatccatctaatc- |
99 |
Q |
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| T |
41668552 |
attagaaacaaacaaaaattaacatgcttctaataattttgtaaaggattgatgtcaatcactctcgtagtcacttgaccagaaggaatccatctaataa |
41668453 |
T |
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| Q |
100 |
--gtttcacacagtaaagtgtgagagttatcgaaatagaagaggcgctcgtaacctatatagagcatccatactcgatgctagctagtctcacaat |
193 |
Q |
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| T |
41668452 |
ttgtttcacacagtaaagtgtgagagttatcgaaatagaagaggcgctcgtaacctatatagagcatccatactcgatgctagctagtctcacaat |
41668357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 229 - 351
Target Start/End: Complemental strand, 41668361 - 41668239
Alignment:
| Q |
229 |
acaatagtttattttcaatgctttaatgttatttacaattctcctatttacaaatgaaaaacactactcttggtaaccttggtacgatattaattattct |
328 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41668361 |
acaatagtttattttcaatgctctaatgttatttacaattctcctatttacaaatgaaaaacactactcttggtaaccttggtacgatattaattattct |
41668262 |
T |
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| Q |
329 |
tgcggagaaaggaagggcctacc |
351 |
Q |
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||||||||||||||||||||||| |
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| T |
41668261 |
tgcggagaaaggaagggcctacc |
41668239 |
T |
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