View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_high_3 (Length: 503)
Name: NF17521_high_3
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 240 - 500
Target Start/End: Original strand, 34483676 - 34483939
Alignment:
| Q |
240 |
gataataactctcttaattagacacttaatttcaatgcaactttggcttcatttggcatacaagtatttgaatttgtggaagatatgttgttgacaagct |
339 |
Q |
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| T |
34483676 |
gataataactctcttaattagacacttaatttcaatgcaactttggcttcatttggcatacaagtatttgaatttgcggaagatatgttgttgacaagct |
34483775 |
T |
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| Q |
340 |
ggtagttacgtacagaatgttactctttatttattctgtaatgccacaagcctttttctgcaccataatgtacgtgattctccttcgtatttttatttat |
439 |
Q |
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| T |
34483776 |
attagttacgtacagaatgttactctttatttattctgtaattccacaagccttcttctgcaccataatgtac-ttattctccttcgtatttttatttat |
34483874 |
T |
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| Q |
440 |
taatttataaaatatataaattagttccgca----atctcatttatcattcaatctcgacttcat |
500 |
Q |
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| T |
34483875 |
taatttataaaatatataaattagttccgcaatatatctcatttatcattcaatctcgacttcat |
34483939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 34482526 - 34482731
Alignment:
| Q |
17 |
attatacgcttaaaatgatgtgctaaagatacagcagagctttgagtatatttaggatttctatctgatgtttgagaatgaatctcaattttagaaggga |
116 |
Q |
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| T |
34482526 |
attatacgcttgaaatgatgtgctaaagatacagcagagttttgagtatatttaggatttctatctgatgtttgagaatgaatctcaattttagaaggga |
34482625 |
T |
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| Q |
117 |
ttctgatattttttaagcaatatattctttctgcttctgatcttttttagatctaatgtatgactctcttttgcaaaaagacttgttgagagacgtgagt |
216 |
Q |
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| T |
34482626 |
tcctgatattttttaagcaatatattctttctgcttctaatcttttttagatctaatgtatgactctcttttgcaaaaagacttgttgagagacgtgagt |
34482725 |
T |
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| Q |
217 |
tgagag |
222 |
Q |
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| T |
34482726 |
tgagag |
34482731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 26330751 - 26330848
Alignment:
| Q |
73 |
atttctatctgatgtttgagaatgaatctcaattttagaag-ggattctgatattttttaagcaatatattctttctgcttctgatcttttttagatct |
170 |
Q |
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| T |
26330751 |
atttctatctaatgtttgagaatgaatctcaagttt-gaagatgattctgatatttttcaagtaatcttgattttctgcttctgatcttttttggatct |
26330848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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