View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17521_high_5 (Length: 459)

Name: NF17521_high_5
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17521_high_5
NF17521_high_5
[»] chr4 (10 HSPs)
chr4 (95-438)||(36626260-36626603)
chr4 (95-339)||(53323400-53323643)
chr4 (347-441)||(53324200-53324293)
chr4 (95-173)||(53447911-53447990)
chr4 (14-60)||(53323319-53323365)
chr4 (12-60)||(36626177-36626225)
chr4 (12-57)||(6329376-6329421)
chr4 (12-57)||(53448030-53448075)
chr4 (232-276)||(53447804-53447848)
chr4 (12-57)||(32208317-32208362)
[»] chr7 (8 HSPs)
chr7 (237-332)||(46429845-46429939)
chr7 (12-57)||(22643919-22643964)
chr7 (12-57)||(38478776-38478821)
chr7 (12-57)||(2430595-2430640)
chr7 (12-57)||(11202419-11202464)
chr7 (12-57)||(33614141-33614186)
chr7 (12-57)||(33989738-33989783)
chr7 (12-57)||(48402566-48402611)
[»] chr8 (3 HSPs)
chr8 (252-325)||(25980519-25980592)
chr8 (12-57)||(22914474-22914519)
chr8 (95-135)||(25980708-25980748)
[»] chr5 (2 HSPs)
chr5 (12-57)||(18515693-18515738)
chr5 (12-57)||(29801717-29801762)
[»] chr3 (4 HSPs)
chr3 (12-57)||(27516259-27516304)
chr3 (12-55)||(4986950-4986993)
chr3 (12-57)||(36040386-36040431)
chr3 (12-60)||(24929157-24929205)
[»] chr1 (4 HSPs)
chr1 (12-57)||(5187010-5187055)
chr1 (12-57)||(43360332-43360377)
chr1 (12-57)||(50372835-50372880)
chr1 (12-56)||(4851386-4851430)
[»] chr2 (2 HSPs)
chr2 (12-57)||(725113-725158)
chr2 (12-57)||(38586975-38587020)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 95 - 438
Target Start/End: Original strand, 36626260 - 36626603
Alignment:
Q  95 tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36626260 tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac 36626359  T
Q  195 tttcaccccttaaataannnnnnnnnnnnnnnnnnnctaagcaattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaa 294  Q
    ||||||||||||||| |                   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36626360 tttcaccccttaaattattttttttattttttatttctaagcaattcaagtattaacccataattatcatttatcacagctttcgacgattcacttgcaa 36626459  T
Q  295 tcacattagatgcactatttgttctttcatttccccaattctttgnnnnnnnataattcatgtgatttctattcttttatttaagattatgaagaagaag 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||    
T  36626460 tcacattagatgcactatttgttctttcatttccccaattctttgtttttttataattcatgtgctttctattcttttatttaagattatgaagaagaag 36626559  T
Q  395 aaaaattcaactcccagttattcattcccaatctatataggctt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36626560 aaaaattcaactcccagttattcattcccaatctatataggctt 36626603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 95 - 339
Target Start/End: Original strand, 53323400 - 53323643
Alignment:
Q  95 tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac 194  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  53323400 tgttaattaattttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaagcttacgaacaattcaat 53323499  T
Q  195 tttcaccccttaaataannnnnnnnnnnnnnnnnnnctaagcaattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaa 294  Q
    ||||||||| ||| ||                    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  53323500 tttcacccc-taactatatatatatatattttatttctaagcaattcaagtattaacccataattatcatttatcacagctttcggcgattcacttgcaa 53323598  T
Q  295 tcacattagatgcactatttgttctttcatttccccaattctttg 339  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  53323599 tcacattagacgcactatttgttctttcatttccccaattttttg 53323643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 347 - 441
Target Start/End: Original strand, 53324200 - 53324293
Alignment:
Q  347 ataattcatgtgatttctattcttttatttaagattatgaagaagaagaaaaattcaactcccagttattcattcccaatctatataggcttcca 441  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53324200 ataattcatgtgctttctattcttttattta-gattatgaagaagaagaaaaattcaactcccagttattcattcccaatctatataggcttcca 53324293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 53447990 - 53447911
Alignment:
Q  95 tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgca-cagctccactccaccat 173  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  53447990 tgttaattatttttgataatacaaaaatacccttgctttttaaaaataaatccattgatgcatcagcttcactctaccat 53447911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 53323319 - 53323365
Alignment:
Q  14 agagaaaaagataagaaatggagtagatttaatgtattgtttggcat 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  53323319 agagaaaaagataagaaatggagtagatttaatgtattgtttggcat 53323365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 36626177 - 36626225
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttggcat 60  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36626177 agagagaaaaagataagaaatggagtagatttaatgtattatttggcat 36626225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 6329421 - 6329376
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||    
T  6329421 agagagaaaaagataagaaatagagtagatttgatatattgtttgg 6329376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 53448075 - 53448030
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  53448075 agagagaaagagatgagaaatagagtagatttaatgtattgtttgg 53448030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 53447848 - 53447804
Alignment:
Q  232 taagcaattcaagtattaacccataattatcatttatcacagctt 276  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||    
T  53447848 taagcaattcaattattaactcataattatcatttatcatagctt 53447804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 32208317 - 32208362
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| |||||||||| |||||| ||||||    
T  32208317 agagagaaaaagatgagaaatagagtagatttgatgtatggtttgg 32208362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 46429845 - 46429939
Alignment:
Q  237 aattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaatcacattagatgcactatttgttctttcatttccccaa 332  Q
    |||||||||||||||||||||| |||||||||||||||||||  |  ||| ||| | | |||||| ||||| ||||||||||||||||||||||||    
T  46429845 aattcaagtattaacccataat-atcatttatcacagctttcggcacttcccttaccagcacattcgatgccctatttgttctttcatttccccaa 46429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 22643919 - 22643964
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||    
T  22643919 agagagaaaaagatgagaaatagagtagatttgatgtattgtttgg 22643964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 38478776 - 38478821
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||    
T  38478776 agagagaaaaagataaaaaatatagtagatttaatgtattgtttgg 38478821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 2430595 - 2430640
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| ||| |||||| |||||||||||||    
T  2430595 agagagaaaaagatgagaaatagagaagatttgatgtattgtttgg 2430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 11202419 - 11202464
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||| |||||||| |||||||||| ||| |||||||||    
T  11202419 agagagaaaaaggtaagaaatagagtagatttgatggattgtttgg 11202464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 33614141 - 33614186
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| |||||||||| | |||||||||||    
T  33614141 agagagaaaaagatgagaaatagagtagatttgaggtattgtttgg 33614186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 33989783 - 33989738
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||| |||||||| |||||||||| ||| |||||||||    
T  33989783 agagagaaaaaggtaagaaatagagtagatttgatggattgtttgg 33989738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 48402566 - 48402611
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||| | |||||| |||||||||| |||||||||||||    
T  48402566 agagagaaaaaggtgagaaatagagtagatttgatgtattgtttgg 48402611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 25980592 - 25980519
Alignment:
Q  252 ccataattatcatttatcacagctttcaacgattcacttgcaatcacattagatgcactatttgttctttcatt 325  Q
    ||||||||||||||||||||||||||||  |||| |||| | |||| |||  ||||||||||||||||||||||    
T  25980592 ccataattatcatttatcacagctttcagtgatttacttaccatcatattccatgcactatttgttctttcatt 25980519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22914519 - 22914474
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||    
T  22914519 agagagaaaaagatgagaaatagagtagatttgatgtattgtttgg 22914474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 25980748 - 25980708
Alignment:
Q  95 tgttaattagttttgatagtacaaaaatacccttgcttttt 135  Q
    ||||||||| |||| ||||||| ||||||||||||||||||    
T  25980748 tgttaattattttttatagtaccaaaatacccttgcttttt 25980708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 18515693 - 18515738
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  18515693 agagagaaagagatgagaaatagagtagatttaatgtattgtttgg 18515738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 29801717 - 29801762
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| | |||| |||||||||| |||||||||||||    
T  29801717 agagagaaaaagatgaaaaatagagtagatttgatgtattgtttgg 29801762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 27516304 - 27516259
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||    
T  27516304 agagagaaaaagatgagaaatagagtagatttgatgtattgtttgg 27516259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 4986993 - 4986950
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgttt 55  Q
    |||||||||||||| |||||| |||||||||| |||||||||||    
T  4986993 agagagaaaaagatgagaaatagagtagatttgatgtattgttt 4986950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 36040386 - 36040431
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||| | |||||| |||||||||| |||||||||||||    
T  36040386 agagagaaaaaggtgagaaatagagtagatttgatgtattgtttgg 36040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 24929157 - 24929205
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttggcat 60  Q
    ||||||||| |||| |||||| |||||||||| ||| ||||||||||||    
T  24929157 agagagaaatagatgagaaatagagtagatttgatgaattgtttggcat 24929205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5187010 - 5187055
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  5187010 agagagaaagagaaaagaaatagagtagatttaatgtattgtttgg 5187055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 43360332 - 43360377
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| |||| |||||| |||||||||| |||||||||||||    
T  43360332 agagagaaatagatgagaaatagagtagatttgatgtattgtttgg 43360377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 50372835 - 50372880
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| ||||||||||| |||||||||| |||||| ||||||    
T  50372835 agagagaaagagataagaaatagagtagatttgatgtatggtttgg 50372880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 4851430 - 4851386
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttg 56  Q
    ||||||||||| || |||||| |||||||||| ||||||||||||    
T  4851430 agagagaaaaatatgagaaatagagtagatttgatgtattgtttg 4851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 725158 - 725113
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    |||||||||||| |||||||| |||||||||| ||| |||||||||    
T  725158 agagagaaaaaggtaagaaatagagtagatttgatggattgtttgg 725113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 38587020 - 38586975
Alignment:
Q  12 agagagaaaaagataagaaatggagtagatttaatgtattgtttgg 57  Q
    ||||||||| || |||||||| |||||||||| |||||||||||||    
T  38587020 agagagaaataggtaagaaatagagtagatttgatgtattgtttgg 38586975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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