View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17521_high_9 (Length: 430)

Name: NF17521_high_9
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17521_high_9
NF17521_high_9
[»] chr7 (12 HSPs)
chr7 (1-412)||(3816922-3817332)
chr7 (360-414)||(339507-339561)
chr7 (373-414)||(12804136-12804177)
chr7 (373-414)||(351922-351963)
chr7 (373-414)||(20239087-20239128)
chr7 (373-412)||(42767276-42767316)
chr7 (333-372)||(43540154-43540193)
chr7 (374-412)||(3811152-3811190)
chr7 (374-416)||(5849660-5849702)
chr7 (373-414)||(22741900-22741941)
chr7 (374-414)||(35147986-35148027)
chr7 (374-414)||(28420942-28420982)
[»] chr1 (14 HSPs)
chr1 (1-97)||(31052194-31052288)
chr1 (333-411)||(31051688-31051766)
chr1 (351-414)||(25387464-25387527)
chr1 (360-414)||(24963671-24963725)
chr1 (374-414)||(27955296-27955336)
chr1 (374-414)||(44410146-44410186)
chr1 (374-414)||(50306325-50306365)
chr1 (373-412)||(1078362-1078401)
chr1 (374-415)||(12183562-12183603)
chr1 (378-414)||(34740122-34740158)
chr1 (373-412)||(31058182-31058221)
chr1 (374-412)||(25381518-25381556)
chr1 (373-406)||(24926737-24926770)
chr1 (351-414)||(38151935-38151998)
[»] chr8 (15 HSPs)
chr8 (332-412)||(32891027-32891107)
chr8 (360-412)||(42992972-42993025)
chr8 (374-414)||(9935415-9935455)
chr8 (374-414)||(14418074-14418114)
chr8 (365-411)||(1882725-1882772)
chr8 (363-412)||(10700147-10700197)
chr8 (357-414)||(39735514-39735575)
chr8 (373-412)||(7771370-7771409)
chr8 (374-412)||(32897151-32897189)
chr8 (373-412)||(10705981-10706021)
chr8 (374-414)||(42033890-42033930)
chr8 (374-412)||(14799399-14799437)
chr8 (334-384)||(31373510-31373560)
chr8 (381-414)||(22219706-22219739)
chr8 (374-414)||(39689798-39689838)
[»] chr5 (13 HSPs)
chr5 (332-412)||(28531423-28531503)
chr5 (334-412)||(32096903-32096982)
chr5 (333-414)||(12692223-12692304)
chr5 (353-413)||(19066069-19066129)
chr5 (358-414)||(24054471-24054528)
chr5 (373-414)||(19059746-19059787)
chr5 (374-412)||(28525369-28525407)
chr5 (380-415)||(8706454-8706489)
chr5 (371-414)||(30772420-30772463)
chr5 (374-412)||(7389531-7389569)
chr5 (374-412)||(16215157-16215195)
chr5 (374-414)||(12686162-12686202)
chr5 (373-414)||(30384358-30384401)
[»] chr3 (16 HSPs)
chr3 (332-412)||(49151750-49151830)
chr3 (351-414)||(10244294-10244357)
chr3 (341-412)||(11846013-11846084)
chr3 (331-412)||(42197102-42197183)
chr3 (360-412)||(10766840-10766892)
chr3 (332-412)||(38455493-38455571)
chr3 (377-414)||(55003398-55003435)
chr3 (374-414)||(30051085-30051125)
chr3 (374-412)||(10760633-10760671)
chr3 (373-414)||(28965001-28965043)
chr3 (374-412)||(49157817-49157855)
chr3 (374-414)||(10238195-10238235)
chr3 (374-410)||(11839708-11839744)
chr3 (374-410)||(48128030-48128066)
chr3 (359-412)||(17593249-17593303)
chr3 (380-414)||(53069043-53069077)
[»] chr2 (11 HSPs)
chr2 (337-412)||(31002515-31002591)
chr2 (332-414)||(35090591-35090672)
chr2 (331-412)||(13456238-13456319)
chr2 (374-414)||(28682928-28682968)
chr2 (374-414)||(36750551-36750591)
chr2 (337-412)||(29833346-29833421)
chr2 (373-414)||(44716786-44716827)
chr2 (369-412)||(31008493-31008537)
chr2 (380-414)||(35084665-35084699)
chr2 (379-412)||(13149674-13149707)
chr2 (374-414)||(11048536-11048576)
[»] chr4 (13 HSPs)
chr4 (351-414)||(26963301-26963364)
chr4 (333-414)||(49976723-49976804)
chr4 (351-414)||(24288123-24288184)
chr4 (360-415)||(48161091-48161146)
chr4 (373-414)||(4632923-4632964)
chr4 (374-414)||(26956812-26956852)
chr4 (360-414)||(10739308-10739362)
chr4 (360-414)||(10953077-10953131)
chr4 (374-415)||(48167310-48167351)
chr4 (374-414)||(50168729-50168769)
chr4 (373-412)||(6257187-6257226)
chr4 (374-412)||(33458249-33458288)
chr4 (379-415)||(55473133-55473169)
[»] scaffold0012 (1 HSPs)
scaffold0012 (332-414)||(172831-172913)
[»] chr6 (11 HSPs)
chr6 (332-414)||(8662722-8662804)
chr6 (332-414)||(21196962-21197044)
chr6 (334-412)||(25343766-25343845)
chr6 (374-414)||(32035269-32035309)
chr6 (374-412)||(4580304-4580342)
chr6 (373-414)||(18778720-18778761)
chr6 (374-415)||(21190849-21190890)
chr6 (371-412)||(21782733-21782774)
chr6 (351-414)||(6098117-6098181)
chr6 (374-414)||(31756196-31756238)
chr6 (373-414)||(8650785-8650826)
[»] scaffold0208 (1 HSPs)
scaffold0208 (351-413)||(6661-6722)
[»] scaffold0363 (1 HSPs)
scaffold0363 (374-414)||(605-645)
[»] scaffold0440 (1 HSPs)
scaffold0440 (374-414)||(1176-1217)
[»] scaffold1114 (1 HSPs)
scaffold1114 (374-414)||(1221-1261)
[»] scaffold0236 (1 HSPs)
scaffold0236 (373-414)||(5671-5712)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 3816922 - 3817332
Alignment:
Q  1 aaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcacgatggacatcgaggaccgaaattaaatgcacaaatgtttgtcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3816922 aaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcaggatggacatcgaggactgaaattaaatgcacaaatgtttgtcac 3817021  T
Q  101 ttcaatattaaagaaaacaaaagcatggataaattagaggcaaataggcaatcgataaccaaagatttgcaaacggcatatggataaacgaaaatttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||    
T  3817022 ttcaatattaaagaaaacaaaagcatggataaattagagtcaaataggcaatcgatgaccaaagatttgcaaacggcacatggataaacgaaaatttaca 3817121  T
Q  201 aacgacatcgataaccgaaaaaacaaattcacatgtaggtttagaac-nnnnnnncttcgaaaaaacagaataggcatcgatgactaatagtcatcggat 299  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||    
T  3817122 aacgacatcaataaccg-aaaaacaaattcacatgtaggtttagaacaaaaaaaacttcg-aaaaacagaataggcatcgatgactaatagtcatcggat 3817219  T
Q  300 acatatatatcaagccacaacaaatcaaatcataatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaa 399  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||| ||    
T  3817220 acatatatatcaagccacaacaaatcaaatcataattccaatagatcaaacataaacaccgctctgataccacttgttggaaatttaggtcttaatataa 3817319  T
Q  400 acagatttcataa 412  Q
    |||||||||||||    
T  3817320 acagatttcataa 3817332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 339561 - 339507
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  339561 gctctgataccacttgttggaaatttagctcttaatataaagagatttcataaaa 339507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 12804177 - 12804136
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12804177 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 12804136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 351963 - 351922
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  351963 ttgttggaaatttagctcttaatataaacagatttcataaaa 351922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 20239128 - 20239087
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  20239128 ttgttggaaatttaggtcttaatataaacaaatttcataaaa 20239087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 412
Target Start/End: Original strand, 42767276 - 42767316
Alignment:
Q  373 ttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  42767276 ttgttggaaatttaggtcttaattaaaaacagatttcataa 42767316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 372
Target Start/End: Complemental strand, 43540193 - 43540154
Alignment:
Q  333 aatcccaatagatgaaatatgaagaccgctctgataccac 372  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  43540193 aatctcaatagatgaaacatgaagaccgctctgataccac 43540154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 3811152 - 3811190
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  3811152 tgttggaaatgtaggtcttaatataaacagatttcataa 3811190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 5849702 - 5849660
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaatt 416  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||    
T  5849702 tgttgcaaatttaggtcttaataaaaacaaattttataaaatt 5849660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 22741900 - 22741941
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  22741900 ttgttggaaatttaggtctcaataagaacaggtttcataaaa 22741941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 35147986 - 35148027
Alignment:
Q  374 tgttggaaattt-aggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  35147986 tgttggaaattttatgtcttaataaaaacagatttcataaaa 35148027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 28420942 - 28420982
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||| |||| ||| |||||||||||||||||    
T  28420942 tgttggaaatttagctcttgatataaacagatttcataaaa 28420982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31052288 - 31052194
Alignment:
Q  1 aaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcacgatggacatcgaggaccgaaattaaatgcacaaatgtttgt 97  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31052288 aaacacaggcacat--attccaaaagtcaaagtatggaaactcaatatttaatcaagatggacatcgaggaccgaaattaaatgcacaaatgtttgt 31052194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 31051766 - 31051688
Alignment:
Q  333 aatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcata 411  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  31051766 aatctcaatagatcaaacatgaagaccgctctgataccacttgttaggaatttaggtcttaatataaacagatttcata 31051688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 25387464 - 25387527
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  25387464 atgaagaccgctctgataccacttgttggaaatatagatcttaatataaacagatttcataaaa 25387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 24963671 - 24963725
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||| |||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  24963671 gctctaataccatttgttgaaaatttagatcttaataaaaacagatttcataaaa 24963725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 27955336 - 27955296
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  27955336 tgttagaaatttaggtcttaataaaaacagatttcataaaa 27955296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 44410186 - 44410146
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  44410186 tgttggaaatttaggtcttactaaaaacagatttcataaaa 44410146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 50306365 - 50306325
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  50306365 tgttggaaatttaggtcttaatataaacagatttcataaaa 50306325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 1078401 - 1078362
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1078401 ttgttggaaatttaggtcttaatataaacagatttcataa 1078362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 12183562 - 12183603
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaat 415  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  12183562 tgttggaaatttagttcttaataaaaatagatttcataaaat 12183603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 34740158 - 34740122
Alignment:
Q  378 ggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34740158 ggaaatttaggtcttaatataaacagatttcataaaa 34740122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 31058221 - 31058182
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  31058221 ttgttagaaatttaggtcttaatataaacagatttcataa 31058182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 25381518 - 25381556
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  25381518 tgttggaaatataggtcttaatataaacagatttcataa 25381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 24926737 - 24926770
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatt 406  Q
    |||||| |||||||||||||||||||||||||||    
T  24926737 ttgttgaaaatttaggtcttaataaaaacagatt 24926770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 38151935 - 38151998
Alignment:
Q  351 atgaagac-cgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||| ||||||||||||||||||| |||||  | |||||||| |||| |||||||||||||    
T  38151935 atgaagactcgctctgataccacttgttagaaatccaagtcttaat-aaaatagatttcataaaa 38151998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 32891107 - 32891027
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32891107 taatcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaatataaacagatttcataa 32891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 42992972 - 42993025
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  42992972 gctctgataccacttgatggaaatttaggtcttaattaaaaacagatttcataa 42993025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 9935455 - 9935415
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9935455 tgttggaaatttaggtcttaataaaaacagatttcataaaa 9935415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 14418114 - 14418074
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14418114 tgttggaaatttaggtcttaataaaaacagatttcataaaa 14418074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 1882725 - 1882772
Alignment:
Q  365 gataccacttgttggaaatttaggtcttaata-aaaacagatttcata 411  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  1882725 gataccacttgttggaaatttaggtcttaatataaaacagatttcata 1882772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 10700197 - 10700147
Alignment:
Q  363 ctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  10700197 ctgataccacttgttggaaatttaggtcttaattaaaaacatatttcataa 10700147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 39735514 - 39735575
Alignment:
Q  357 accgctctgataccacttgttggaaatttaggtct----taataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||| |    ||||||||| |||||||||||||    
T  39735514 accgctctgataccacttgttggaaatttaggtttttaataataaaaatagatttcataaaa 39735575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 7771409 - 7771370
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7771409 ttgttggaaatttaggtcttaatataaacagatttcataa 7771370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 32897189 - 32897151
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  32897189 tgttggaaatttaggtcttaatataaacagatttcataa 32897151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 10706021 - 10705981
Alignment:
Q  373 ttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  10706021 ttgttggaaatttaggtcttaattaaaaacagatttcataa 10705981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 42033930 - 42033890
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  42033930 tgttggaaatttaggtcttactaaaaatagatttcataaaa 42033890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 14799399 - 14799437
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  14799399 tgttggaaatttaggtcttaatataaacaaatttcataa 14799437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 31373510 - 31373560
Alignment:
Q  334 atcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatt 384  Q
    ||||||||| || ||| |||||||||| |||||||||||||||| ||||||    
T  31373510 atcccaataaatcaaacatgaagaccgttctgataccacttgttagaaatt 31373560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 22219706 - 22219739
Alignment:
Q  381 aatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||| |||||||||||||    
T  22219706 aatttaggtcttaataaaaagagatttcataaaa 22219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 39689838 - 39689798
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||| | |||||| ||||||||||||||||||||||||    
T  39689838 tgttggagacttaggttttaataaaaacagatttcataaaa 39689798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 28531423 - 28531503
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28531423 taatcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaatataaacagatttcataa 28531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 32096903 - 32096982
Alignment:
Q  334 atcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    ||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32096903 atcccaataaatcaaacatgaagaccgctctgataccatttgttggaaatttaggtcttaattaaaaacagatttcataa 32096982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 414
Target Start/End: Original strand, 12692223 - 12692304
Alignment:
Q  333 aatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||| |||| || ||| |||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  12692223 aatcctaataaatcaaacatgaagacggctctgataccacttgttggaaatttagctcttgatataaacagatttcataaaa 12692304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 19066069 - 19066129
Alignment:
Q  353 gaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaa 413  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  19066069 gaagaccgctctgataccactagttggaaatttaagtcttaataaaaacatatttcataaa 19066129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 24054528 - 24054471
Alignment:
Q  358 ccgctctgataccacttgttggaaattt-aggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  24054528 ccgctctgataccacttgttgaaaattttaggtcttaataaaaacagatttcataaaa 24054471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 19059746 - 19059787
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  19059746 ttgttggaaatttaggtcttaataaaaacatatttcataaaa 19059787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 28525369 - 28525407
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  28525369 tgttggaaatttaggtcttaatataaacagatttcataa 28525407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 8706454 - 8706489
Alignment:
Q  380 aaatttaggtcttaataaaaacagatttcataaaat 415  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8706454 aaatttaggtcttaataaaaatagatttcataaaat 8706489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 30772463 - 30772420
Alignment:
Q  371 acttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  30772463 acttgttggaaatttagttcttaataaaaataaatttcataaaa 30772420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 7389531 - 7389569
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  7389531 tgttggaaatttaggtcttaatataaacaaatttcataa 7389569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 16215157 - 16215195
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  16215157 tgttagaaatttaggtctttataaaaacagatttcataa 16215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 12686162 - 12686202
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||| |||| ||| |||||||||||||||||    
T  12686162 tgttggaaatttagctcttgatataaacagatttcataaaa 12686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 30384358 - 30384401
Alignment:
Q  373 ttgttggaaatttaggtcttaat--aaaaacagatttcataaaa 414  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  30384358 ttgttggaaatttaggttttaataaaaaaacagatttcataaaa 30384401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 49151830 - 49151750
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49151830 taatcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaatataaacagatttcataa 49151750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 10244294 - 10244357
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  10244294 atgaagaccgctctgataccacttgttggaaatttagctcttaatataaacagatttcataaaa 10244357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 11846013 - 11846084
Alignment:
Q  341 tagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  11846013 tagatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaacagattttataa 11846084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 42197102 - 42197183
Alignment:
Q  331 ataatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||| |||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  42197102 ataatcctaataaatcaaacatgaagaccgctctgataccacttgttggaaatataggtcttaatataaatagatttcataa 42197183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 10766840 - 10766892
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  10766840 gctctgataccacttgttggaaatttaggtcttattaaaaacaaatttcataa 10766892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 38455493 - 38455571
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||| |||| || ||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||  |||||||||||    
T  38455493 taatcctaataaatcaaacatgaagaccgctctgataccatttgttggaaatttcggtcttaatataa--agatttcataa 38455571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 55003398 - 55003435
Alignment:
Q  377 tggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55003398 tggaaatttaggtcttaataaaaacagatttcataaaa 55003435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 30051085 - 30051125
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  30051085 tgttgaaaatttaggtcttaataaaaacagatttcataaaa 30051125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 10760633 - 10760671
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10760633 tgttggaaatttaggtcttattaaaaacagatttcataa 10760671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 28965043 - 28965001
Alignment:
Q  373 ttgttggaaatttaggtcttaa-taaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  28965043 ttgttggaaatttaggtcttaattaaaaacagatttcataaaa 28965001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 49157855 - 49157817
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  49157855 tgttggaaatttaggtcttaatataaacagatttcataa 49157817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 10238195 - 10238235
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  10238195 tgttggaaatttagctcttaatataaacagatttcataaaa 10238235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 11839708 - 11839744
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcat 410  Q
    ||||||||||||||||||||||| |||||||||||||    
T  11839708 tgttggaaatttaggtcttaatataaacagatttcat 11839744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 48128030 - 48128066
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcat 410  Q
    |||||||||||||||||| ||||||||||||||||||    
T  48128030 tgttggaaatttaggtctcaataaaaacagatttcat 48128066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 17593249 - 17593303
Alignment:
Q  359 cgctctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||    
T  17593249 cgctctgataacacttgtaggaaatttaggtcttaattaaaaatatatttcataa 17593303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 53069043 - 53069077
Alignment:
Q  380 aaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||| ||||||    
T  53069043 aaatttaggtcttaataaaaacagattttataaaa 53069077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 31002591 - 31002515
Alignment:
Q  337 ccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31002591 ccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttaggtcttaattaaaaacagatttcataa 31002515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 35090591 - 35090672
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||| ||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  35090591 taatctcaataaatcaaacatgaagaccgctctgataccacttgttg-aaatttaggtcttaatataaacagatttcataaaa 35090672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 13456319 - 13456238
Alignment:
Q  331 ataatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||| |||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  13456319 ataatcctaataaatcaaacatgaagaccgctctgataccacttgttggaaatataggtcttaatataaatagatttcataa 13456238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 28682928 - 28682968
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  28682928 tgttggaaatttaggtcttaatataaacagatttcataaaa 28682968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 36750591 - 36750551
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  36750591 tgttggaaatttaagtcttaataaaaacagatttcataaaa 36750551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 29833421 - 29833346
Alignment:
Q  337 ccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||| || ||| |||||||| |||||||||| ||||||| ||||||||||| | |||| ||| |||||||||||    
T  29833421 ccaataaatcaaacatgaagactgctctgatactacttgttagaaatttaggtataaatataaagagatttcataa 29833346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 44716786 - 44716827
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  44716786 ttgttagaaatttaggtcttaataaaaacagatatcataaaa 44716827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 31008537 - 31008493
Alignment:
Q  369 ccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||    
T  31008537 ccacctgttggaaatttaggtcttaattaaaaacagatttcataa 31008493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 35084665 - 35084699
Alignment:
Q  380 aaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||| |||||||||||||||||    
T  35084665 aaatttaggtcttaatataaacagatttcataaaa 35084699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 13149674 - 13149707
Alignment:
Q  379 gaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||| |||||||||||||||    
T  13149674 gaaatttaggtcttaatataaacagatttcataa 13149707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 11048536 - 11048576
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||| |||||| | |||||||||||    
T  11048536 tgttggaaatttaggtcttattaaaaataaatttcataaaa 11048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 26963301 - 26963364
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  26963301 atgaagaccgctctgatactacttgttggaaatttaggtcttaataaaaacaaatttcataaaa 26963364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 49976804 - 49976723
Alignment:
Q  333 aatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||| || ||| ||||||||| ||||||||||||||||| ||||||||| | |||||||||||| |||||||||||    
T  49976804 aatcccaataaatcaaacatgaagaccactctgataccacttgttagaaatttagattttaataaaaacaaatttcataaaa 49976723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 24288184 - 24288123
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  24288184 atgaagaccgctctgataccacttgttggaaatttaggtcttaat--aaatagatttcataaaa 24288123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 48161146 - 48161091
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaat 415  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  48161146 gctctgataccacttgttagaaatttaggtcttaataaaaatagatttcataaaat 48161091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 4632964 - 4632923
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4632964 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 4632923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 26956812 - 26956852
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26956812 tgttggaaatttaggtcttaataaaaacagatttcataaaa 26956852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 10739308 - 10739362
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||||||||||||    
T  10739308 gctctgataccacttgttggacatttagctcttaacataaacagatttcataaaa 10739362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 10953077 - 10953131
Alignment:
Q  360 gctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||||||||||||    
T  10953077 gctctgataccacttgttggacatttagctcttaacataaacagatttcataaaa 10953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 48167351 - 48167310
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaat 415  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  48167351 tgttagaaatttaggtcttaataaaaatagatttcataaaat 48167310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 50168769 - 50168729
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  50168769 tgttggaaatttaggtcttaataaaaccagattacataaaa 50168729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Original strand, 6257187 - 6257226
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  6257187 ttgttggaaatttaggtcttaatataaatagatttcataa 6257226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 33458249 - 33458288
Alignment:
Q  374 tgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  33458249 tgttggaaatttaggtcttaattaaaaacagatttcataa 33458288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 55473133 - 55473169
Alignment:
Q  379 gaaatttaggtcttaataaaaacagatttcataaaat 415  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  55473133 gaaatttaggtcttaatagaaacaaatttcataaaat 55473169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 172831 - 172913
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||    
T  172831 taatcccaataaatcaaacatgaagaccgctctgatactacttgttgaaaatttaggtcttaatataaacaggtttcataaaa 172913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 8662722 - 8662804
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||| || ||| || ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  8662722 taatcccaataaatcaaacataaagaccgctctgataccacttgttgtaaatttagctcttaatataaacagatttcataaaa 8662804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 21196962 - 21197044
Alignment:
Q  332 taatcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  21196962 taatcctaataaatcaaacataaagaccgctctgataccacttgttggaaatttaggtcatagtaaaaacagatttcataaaa 21197044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 25343845 - 25343766
Alignment:
Q  334 atcccaatagatgaaatatgaagaccgctctgataccacttgttggaaatttaggtcttaa-taaaaacagatttcataa 412  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||| |||||||||    
T  25343845 atcccaataaatcaaacatgaagaccgctctgataccacttgttggaaatttatatcttaattaaaaacaaatttcataa 25343766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 32035269 - 32035309
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  32035269 tgttggaaatttaggtcttaatataaacagatttcataaaa 32035309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 4580304 - 4580342
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4580304 tgttggaaatttaggtcttaatataaacagatttcataa 4580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 18778761 - 18778720
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  18778761 ttgttggaaatttaggtcttaattaaaacaaatttcataaaa 18778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 21190849 - 21190890
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaat 415  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  21190849 tgttggaaatttaggtcttattataaacagatttcataaaat 21190890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 21782733 - 21782774
Alignment:
Q  371 acttgttggaaatttaggtcttaataaaaacagatttcataa 412  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  21782733 acttgttagaaatttaggtcttaatataaacagatttcataa 21782774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 6098181 - 6098117
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaata-aaaacagatttcataaaa 414  Q
    |||||||  ||||| ||||||||||||| ||| ||||||||||||| |||||| |||||||||||    
T  6098181 atgaagattgctctcataccacttgttgaaaacttaggtcttaataaaaaacaaatttcataaaa 6098117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 31756196 - 31756238
Alignment:
Q  374 tgttggaaatttaggtcttaat--aaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  31756196 tgttggaaatttaggtcttaataaaaaaacagatttcataaaa 31756238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 8650785 - 8650826
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  8650785 ttgttgtaaatttagctcttaatataaacagatttcataaaa 8650826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 6722 - 6661
Alignment:
Q  351 atgaagaccgctctgataccacttgttggaaatttaggtcttaataaaaacagatttcataaa 413  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  6722 atgaagacggctctgataccacttgttggaaatttagctcttaatataaaca-atttcataaa 6661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 605 - 645
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  605 tgttggaaatttaggtcttaataaaaacagatttcataaaa 645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 1176 - 1217
Alignment:
Q  374 tgttggaaatttaggtcttaa-taaaaacagatttcataaaa 414  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1176 tgttggaaatttaggtcttaattaaaaacagatttcataaaa 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 1261 - 1221
Alignment:
Q  374 tgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  1261 tgttggaaattcagatcttaataaaaacagatttcataaaa 1221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 5712 - 5671
Alignment:
Q  373 ttgttggaaatttaggtcttaataaaaacagatttcataaaa 414  Q
    ||||||||||||||| |||| ||| |||||||||||||||||    
T  5712 ttgttggaaatttagctcttgatataaacagatttcataaaa 5671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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