View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_10 (Length: 420)
Name: NF17521_low_10
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 50473545 - 50473155
Alignment:
| Q |
13 |
cagacttcattgcgtaaaccaacaggatactgaacaccattgaaaacagcatccagattgctgtatagactgcatttttgaccagtgaaaggaattccaa |
112 |
Q |
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| T |
50473545 |
cagacttcattgcgtaaaccaacaggataatgaacaccattgaaaacagcatccagattgctgtatagactgcattgttgaccagtgaaaggaattccaa |
50473446 |
T |
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| Q |
113 |
attgtgtccgcgatagtaaaccttcagaaacaacttcatgtctgtttaaatctgtatacaatgcaaaaagatttataacaaatcaggatcaaatttccca |
212 |
Q |
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| T |
50473445 |
attgtgtccgcgatagtaaaccttcagaaacaacttcatgtctgtttaaatctgtatacaatgcaaaaagatttatgacaaatcaggatcaaatttccca |
50473346 |
T |
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| Q |
213 |
acgtaaaatcagcttagaatttgtcacaacacaataagtgaccttactaaaccttaatgtgcagattaatcgtcgtaataataacaattagccactatcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50473345 |
acgtaaaatcagcttagaatttgtcacaacacaataagtgaccttactaaaccttaatgtgcagattaatcgtcgtaataataacaatgagccactatcc |
50473246 |
T |
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| Q |
313 |
tatttgacagatccttctattaaaactatataaaacagaaaacaagaaaatccatatcgtaactgaaaattaaaatatcattcatattaat |
403 |
Q |
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| T |
50473245 |
tatttgacagatccttctattaaaactatataaaacagaaaacaagaaaatccatatcgtaactgaaaattaaaatatcattcatgttaat |
50473155 |
T |
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