View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_11 (Length: 412)
Name: NF17521_low_11
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 31926588 - 31926213
Alignment:
| Q |
1 |
taatcacttaaactttggaattcattatcttgatagctcatggaaaatcgattttcttgatggtttatttgatattgcagagcatgaaatctatccctag |
100 |
Q |
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| T |
31926588 |
taatcacttaaactttggaattcattatcttgatagctcatggaaaatcgaatttcttgatggtttatttgatattgcagagcatgaaatctatccctag |
31926489 |
T |
|
| Q |
101 |
ctgaggaagtcatcaatgtgagaattaaaggtgaggtcaagacaatatattatagaggatgatagttttggcctagatatatacggtatgatgacattgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31926488 |
ctgaggaagtcatcaatgtgagaattaaaggtgaggttaagacaatacattatagaggatgatagttttggcctggatatatacggtatgatgacattgg |
31926389 |
T |
|
| Q |
201 |
tataatgtacatgtaaatcatgtgtgatgaattcttgaaaattcaatataaaatacaaacaagttaacacacatggtattattataaagacaaataggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31926388 |
tataatgtacatgtaaatcatgtgtgatgaattcttgaaaattcaatataaaatacaaacaagttaacacacatggtattattataaagacaaataggtc |
31926289 |
T |
|
| Q |
301 |
gttggtcgtttacaatttcttgataacaaactttggtcagttactttcagttatatatgcatgaaaaatattcagt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31926288 |
gttggtcgtttacaatttcttgataacaaactttggtcagttactttcagttatatatgcatgaaaaataatcagt |
31926213 |
T |
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