View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_13 (Length: 375)
Name: NF17521_low_13
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 372
Target Start/End: Original strand, 55448052 - 55448416
Alignment:
| Q |
5 |
gaaaaatatgtcatactacttcagcctcttgtaaggaagttatnnnnnnnntattccttggaaccatgataaatgttgaaaacactctaatttacctttt |
104 |
Q |
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| T |
55448052 |
gaaaaatatgtcatactacttcagcctctagtaaggaagttataaaaaaa-tattaattggaaccatgataaatgttgaaaacactctaatttacctttt |
55448150 |
T |
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| Q |
105 |
gcaacctctgaaccattattccaagatctaaataacgacgacaatgagaagcttccatagcaaactgcttccaaaccagcacattacgagcagcttctat |
204 |
Q |
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| T |
55448151 |
gcaacctctgaaccattattccaagatctaaataacgacgacaatgagaagcttccatagcaaactgcttccaaaccagcacattacgagcagcttctat |
55448250 |
T |
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| Q |
205 |
caaagcctatatttgatgtataaaaatcaaattaaaacatatgtagagattaccaaaaataggaaatggagaagaggaaaatagcaccaccaaaaacata |
304 |
Q |
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| T |
55448251 |
caaagcctatatttgatg--taaaaatcaaattaaaacatatgtagagattaccgaaaataggaaatggagaagaggaaaatagcaccaccaaaaacata |
55448348 |
T |
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| Q |
305 |
cattaagactaatctgattaataatgtagagcaatacgacggcgagtttttgcattataaattgtcgt |
372 |
Q |
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| T |
55448349 |
cattaagatgaaactgattaataatgtagagcatttcgacggcgagcttttgcattataaattgtcgt |
55448416 |
T |
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Back To:
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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 93 - 371
Target Start/End: Original strand, 33521848 - 33522141
Alignment:
| Q |
93 |
aatttaccttttgcaacctctgaaccattattccaagatctaaataacgacgacaatgagaagcttccatagcaaactgcttccaaaccagcacattacg |
192 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||| ||||||||||||| | ||||||| |
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| T |
33521848 |
aatttaccttttgcaacctctgaaccattcttccaagatctgaataatgttgacaacgagaagcttccatagcaaattgcttccaaaccatcgcattacg |
33521947 |
T |
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| Q |
193 |
agcagcttctatcaaagcctatatttgatgtataaaaatcaaattaaaacatatgtagagattaccaaaaata------------------ggaaatgga |
274 |
Q |
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| | ||||| ||||||||||||| | ||||| |||| ||||| ||| ||||||||||||||| ||||| | || ||||| |
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| T |
33521948 |
ataatcttctttcaaagcctatatgtaatgtaaaaaa---aaattcaaaaatatgtagagattacaaaaaaaataaaaaaaataaaaataggggtatgga |
33522044 |
T |
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| Q |
275 |
gaagaggaaaatagcaccaccaaaaacatacattaagactaatctgattaataatgtagagcaatacgacggcgagtttttgcattataaattgtcg |
371 |
Q |
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| T |
33522045 |
gaagaggaaaatagcaccaccaaaagcatacattaagatgaagctgatcaaccatgtagagcatttcgacagcgagcttttgcattataaattgtcg |
33522141 |
T |
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