View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_15 (Length: 345)
Name: NF17521_low_15
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 37193790 - 37193461
Alignment:
| Q |
1 |
ataaccataccactatatctagataccctggagagaactaatggcattagacagtactcttagagagagaagagcatgatattggtttaccaccaagaga |
100 |
Q |
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| T |
37193790 |
ataaccataccactatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggaga |
37193691 |
T |
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| Q |
101 |
ataaatccatcaacaatgtctggccctaaagcttgaatttgagtgcgata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatcc |
199 |
Q |
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| T |
37193690 |
ataaatccatcaacaatgtctggccctaaagcttgaatttgagtgcgatagttttctttagttttcacagataggtttgtcacattttgcaagtccatcc |
37193591 |
T |
|
| Q |
200 |
attaattgtgctttaggaaatattcacaggaaaattaagatacctttttcatgtataaattttctctcctgctgtatacctttggattggctaaatggga |
299 |
Q |
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| T |
37193590 |
attaattgtgctttaggaaatattcacaggaaaattaagatacctttttcatgtataaattttctctcctgctgcatacctttggattggctaaatggga |
37193491 |
T |
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| Q |
300 |
tgtatgtttataagagctggttctacattc |
329 |
Q |
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| T |
37193490 |
tgtatgtttataagagctggttctacattc |
37193461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 37182658 - 37182329
Alignment:
| Q |
1 |
ataaccataccactatatctagataccctggagagaactaatggcattagacagtactcttagagagagaagagcatgatattggtttaccaccaagaga |
100 |
Q |
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| T |
37182658 |
ataaccataccactatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggaga |
37182559 |
T |
|
| Q |
101 |
ataaatccatcaacaatgtctggccctaaagcttgaatttgagtgcgata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatcc |
199 |
Q |
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| T |
37182558 |
ataaatccatcaacaatgtctggccctaaagcttgaatttgagtgcgatagttttctttagttttcacagataggtttgtcacattttgcaagtccatcc |
37182459 |
T |
|
| Q |
200 |
attaattgtgctttaggaaatattcacaggaaaattaagatacctttttcatgtataaattttctctcctgctgtatacctttggattggctaaatggga |
299 |
Q |
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| T |
37182458 |
attaattgtgctttaggaaatattcacaggaaaattaagatacctttttcatgtataaattttctctcttgctgcatacctttggattggctaaatggga |
37182359 |
T |
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| Q |
300 |
tgtatgtttataagagctggttctacattc |
329 |
Q |
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| T |
37182358 |
tgtatgtttataagagctggttctacattc |
37182329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 37201650 - 37201587
Alignment:
| Q |
14 |
tatatctagataccctggagagaactaatggcattagacagtactcttagagagagaagagcat |
77 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||| |||| | || |||||||||| |
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| T |
37201650 |
tatatctacataccctggagagaactaatggcattacacagttttctttgtgatagaagagcat |
37201587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 37211161 - 37211065
Alignment:
| Q |
158 |
tagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgcttta-ggaaatattcacaggaaaattaagatacctttttcatgtat |
255 |
Q |
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| T |
37211161 |
tagttttcaacgataactttgtcacattt-gcaagtcc-tccattgattgtgctttagggaaatgctcacaagaaaagtaacataccttttgcatgtat |
37211065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 37201570 - 37201503
Alignment:
| Q |
185 |
tttgcaagtccatccattaattgtgctttaggaaatattcacaggaaaattaagatacctttttcatgt |
253 |
Q |
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| T |
37201570 |
tttgcaagtcc-tccattgattatgctttaggaactgttcacaggaaaagtaacataacttttgcatgt |
37201503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 37216578 - 37216526
Alignment:
| Q |
272 |
tgtatacctttggattggctaaatgggatgtatgtttataagagctggttcta |
324 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||||||| ||||| |
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| T |
37216578 |
tgtatacctttgggttggctaaatggcatgtatgccaataagagctgcttcta |
37216526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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