View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_17 (Length: 274)
Name: NF17521_low_17
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 8722021 - 8722274
Alignment:
| Q |
8 |
caaaaacaacatcaatgacaacctcattttctctcattcatgattgtcttcctgttggattcagattccgtccaacagatcaagagcttgtaaactacta |
107 |
Q |
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| T |
8722021 |
caaaaacaacatcaatgacaacctcattttctctcattcatgattgtcttcctgttggattcagattccatccaacagatcaagagcttgtaaactacta |
8722120 |
T |
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| Q |
108 |
tctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatat |
207 |
Q |
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| T |
8722121 |
tctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatat |
8722220 |
T |
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| Q |
208 |
caaacaaaccccattattattttctcataacaatttgatcattttgatatattc |
261 |
Q |
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| T |
8722221 |
caaacaaacctcattattattttcttataacaatgtgatcattttgatatattc |
8722274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 8690720 - 8690867
Alignment:
| Q |
56 |
ttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcat |
155 |
Q |
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| T |
8690720 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtcaacaatgttat |
8690819 |
T |
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| Q |
156 |
agctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaa |
203 |
Q |
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| T |
8690820 |
agctgaagttgatgtatgcaagttcgaaccttgggatttaccaggtaa |
8690867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 8704992 - 8705173
Alignment:
| Q |
56 |
ttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcat |
155 |
Q |
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| T |
8704992 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtaaacaatgttat |
8705091 |
T |
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| Q |
156 |
agctgaagttgatgtattcaagtttaaaccttgggatttaccaggt-aaatatcaaacaaaccccattattattttctcataa |
237 |
Q |
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| T |
8705092 |
agctgaagttgatgtatgcaactatgaaccttgggacttaccaggtaaaaaaacaaacaaa-cccttcattattttctcataa |
8705173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 8740152 - 8740244
Alignment:
| Q |
140 |
ttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatatcaaacaaaccccattattattttct |
232 |
Q |
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| T |
8740152 |
ttgtaaacaatgttatagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttct |
8740244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 198
Target Start/End: Original strand, 8738482 - 8738643
Alignment:
| Q |
37 |
tctctcattcatgattgtcttcctgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaag |
136 |
Q |
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| T |
8738482 |
tctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgttt |
8738581 |
T |
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| Q |
137 |
agtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttacca |
198 |
Q |
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| T |
8738582 |
cccatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattacca |
8738643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 8723418 - 8723565
Alignment:
| Q |
60 |
tgttggattcagattccgtccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagct |
159 |
Q |
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| T |
8723418 |
tgttggattcagattttgtccaacaggtgaagagctagttaatcactaccttagaaataagttgcttggtaatgacgccattgtaaacaatgttatagct |
8723517 |
T |
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| Q |
160 |
gaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatat |
207 |
Q |
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| T |
8723518 |
gaagttgatattcgcaagttcgaaccatgggaattaccaggtaaatat |
8723565 |
T |
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