View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_18 (Length: 266)
Name: NF17521_low_18
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 6703594 - 6703838
Alignment:
| Q |
9 |
gagaagaacgattgtgcaaatggggagaacaagagaacaagacctaaactatctcagatatatggaacaagaaaagctaaacctatggtagcataagcta |
108 |
Q |
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| T |
6703594 |
gagaagaaggatggtgcaaatggggagaacaagagaacaagacctaacttatctcagatatatggaacaagaaaagctaaatctatggtagcatcatcta |
6703693 |
T |
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| Q |
109 |
aatgaaaatgaaaagttagcatctaatcattgtt-nnnnnnncttagaaattttatcctaggtcagatctagctatagatatc---ttaagagcatgcat |
204 |
Q |
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||| ||||||| |||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6703694 |
aataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatctaattaagagcatgcat |
6703793 |
T |
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| Q |
205 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaag |
249 |
Q |
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| T |
6703794 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaag |
6703838 |
T |
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