View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_20 (Length: 248)
Name: NF17521_low_20
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 31761174 - 31760965
Alignment:
| Q |
25 |
cctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaag |
124 |
Q |
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| T |
31761174 |
cctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaag |
31761075 |
T |
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| Q |
125 |
cagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagtt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
31761074 |
cagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaagacttagtt |
31760975 |
T |
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| Q |
225 |
gttctctctg |
234 |
Q |
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||||| |||| |
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| T |
31760974 |
gttctatctg |
31760965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 31749543 - 31749751
Alignment:
| Q |
26 |
ctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagc |
125 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749543 |
ctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagc |
31749642 |
T |
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| Q |
126 |
agggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagttg |
225 |
Q |
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| T |
31749643 |
agagatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatggactaaaccttaaggacttagttg |
31749742 |
T |
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| Q |
226 |
ttctctctg |
234 |
Q |
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|||| |||| |
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| T |
31749743 |
ttctatctg |
31749751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 31767900 - 31767718
Alignment:
| Q |
52 |
tcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcc |
151 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31767900 |
tcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcc |
31767801 |
T |
|
| Q |
152 |
tcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagttgttctctctg |
234 |
Q |
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| T |
31767800 |
tcctccattctttaacttctcacaactcatcacaaatttcaagtcacatggactaaaccttaaagatttagttgttctatctg |
31767718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 31753537 - 31753353
Alignment:
| Q |
50 |
catcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatctt |
149 |
Q |
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||||||||||||| |||| ||| | |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
31753537 |
catcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatgcagcaaatataaatctt |
31753438 |
T |
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| Q |
150 |
cctcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagttgttctctctg |
234 |
Q |
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|| || ||||||| || ||||||||||||||| ||||||| |||| || |||||||||||||| |||||||||||||| |||| |
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| T |
31753437 |
ccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatctg |
31753353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
78 |
tattggtaccaagtgttactaggaagaagagattcaaga |
116 |
Q |
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| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
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