View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_22 (Length: 221)
Name: NF17521_low_22
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31433093 - 31432873
Alignment:
| Q |
1 |
tagtgcactggaaagaagttttacctactgaaaacaataaagcatcacattcgaatatatggcnnnnnnnttgttttctacttggataaccaaaaaagta |
100 |
Q |
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| T |
31433093 |
tagtgcactggaaagaagttttacttactgaaaacaataaagtatcacattcgaatatatggcaaaaaaattgttttcaacttggataaccaaaaaagta |
31432994 |
T |
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| Q |
101 |
aactaacaacccacaactgacagaacattcttttgtgctaaacattcttcagccttaatgtattacgacagtgaagtaacttaacaataatttccactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31432993 |
aactaacaacccacaactgacagaacattcttttgtgctaaacattcttcagccttaatgtattacgacagtgaagtaacttaacaataatttccactaa |
31432894 |
T |
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| Q |
201 |
aaaacatacagtatgaaagat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31432893 |
aaaacatacagtatgaaagat |
31432873 |
T |
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