View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17521_low_4 (Length: 477)

Name: NF17521_low_4
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17521_low_4
NF17521_low_4
[»] chr3 (13 HSPs)
chr3 (13-324)||(25084531-25084843)
chr3 (63-299)||(24923858-24924096)
chr3 (95-299)||(24920257-24920471)
chr3 (178-324)||(24981719-24981866)
chr3 (392-457)||(25084911-25084976)
chr3 (395-458)||(24497502-24497565)
chr3 (392-458)||(24920129-24920195)
chr3 (395-457)||(24923704-24923766)
chr3 (395-451)||(21584847-21584903)
chr3 (395-458)||(24981922-24981985)
chr3 (395-454)||(31825804-31825863)
chr3 (125-318)||(31825933-31826127)
chr3 (169-237)||(21585022-21585090)
[»] chr8 (1 HSPs)
chr8 (395-451)||(14261282-14261338)
[»] chr7 (2 HSPs)
chr7 (396-454)||(39955092-39955150)
chr7 (396-451)||(10575264-10575319)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 25084531 - 25084843
Alignment:
Q  13 agcataggcatacaaataatgtaactaaataaa-tatacagcctccataaaaaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacgc 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084531 agcataggcatacaaataatgtaactaaataaaatatacagcctccataaaaaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacgc 25084630  T
Q  112 attaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaa 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25084631 attaaaatgaaaacggaccgttcaaatatactcatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcaataagttgaaa 25084730  T
Q  212 tccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctcttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084731 tccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctcttt 25084830  T
Q  312 cccactcacaatt 324  Q
    |||||||||||||    
T  25084831 cccactcacaatt 25084843  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 63 - 299
Target Start/End: Complemental strand, 24924096 - 24923858
Alignment:
Q  63 aaacgcaaaaactagcacaaaggtaggaagcgctgatccgcacagacgcatt-aaaatgaaaacggaccgttcaaatatacttatcgacggtcattatta 161  Q
    |||| ||||||||| | |||||| || ||| |||||||||||||| || ||  ||||||| | |  |||||||||||| ||||||||||| ||| ||||     
T  24924096 aaacacaaaaactaacgcaaaggaagaaagtgctgatccgcacaggcgaatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattc 24923997  T
Q  162 tttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcc 261  Q
    |||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||  |||||||||| ||||| ||||||||| ||| |||    
T  24923996 tttttctcaatacgcacggatcgctaatataaaccgtcgataacttaaaatccaacgacgcagaagaaaacacaaaattgag-ttccctcttcttcctcc 24923898  T
Q  262 cg--ctagctaccaactaccattcataaatactcagatcc 299  Q
    ||  ||  ||||||| ||||||| ||||||||||||||||    
T  24923897 cgctctcactaccaattaccattgataaatactcagatcc 24923858  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 24920471 - 24920257
Alignment:
Q  95 ctgatccgcacagacgcattaaaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaa-tacgcacggatcgctaatttag 193  Q
    ||||||||||||| |  ||| |||||||||||||||||||||||||||||||| ||| ||| |||| ||||  | || ||| | |||||||||||| |||    
T  24920471 ctgatccgcacaggctaattcaaatgaaaacggaccgttcaaatatacttatcaacgttcagtattgttttggtgaactacacgcggatcgctaatatag 24920372  T
Q  194 accgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttat---------tcatcccgctagctaccaactaccattca 284  Q
    ||||||||||||||||||||||||||| ||||  |||||||||| || |||||||||||| |         |||||||||| ||| |||| |||||| ||    
T  24920371 accgtcgataagttgaaatccaacgacacagaagaaaacacaaaattcagtttccctcttcttcttcatcctcatcccgctcgcttccaattaccataca 24920272  T
Q  285 taaatactcagatcc 299  Q
    |||||||||||||||    
T  24920271 taaatactcagatcc 24920257  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 24981719 - 24981866
Alignment:
Q  178 cggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaacta 277  Q
    |||||||||||| |||| |||||||||| |||||||||||||| ||||  |||||||||| || ||||||||||||||||| |||||| ||||    |||    
T  24981719 cggatcgctaatatagatcgtcgataagatgaaatccaacgactcagatcaaaacacaaaattcagtttccctcttattcaacccgctcgctagtcgcta 24981818  T
Q  278 ccattcataaatactcagatccgtttctc-tctttcccactcacaatt 324  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  24981819 ccattcataaatactcagatccgcttctcttttttcccactcacaatt 24981866  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 25084911 - 25084976
Alignment:
Q  392 cgcgaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcatag 457  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25084911 cgcgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatag 25084976  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 395 - 458
Target Start/End: Complemental strand, 24497565 - 24497502
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcatagg 458  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24497565 gaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcatagg 24497502  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 24920195 - 24920129
Alignment:
Q  392 cgcgaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcatagg 458  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24920195 cgcgaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagg 24920129  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 24923766 - 24923704
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcatag 457  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  24923766 gaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatag 24923704  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 21584903 - 21584847
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagag 451  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21584903 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagag 21584847  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 458
Target Start/End: Original strand, 24981922 - 24981985
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcatagg 458  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  24981922 gaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcatagg 24981985  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 395 - 454
Target Start/End: Complemental strand, 31825863 - 31825804
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggca 454  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||    
T  31825863 gaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggca 31825804  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 318
Target Start/End: Complemental strand, 31826127 - 31825933
Alignment:
Q  125 cggaccgttcaaatatacttatcgacggtcattattatttttct-caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgca 223  Q
    |||| |||||||||| ||||||| ||| |||| |||   ||||  ||||||||||||||||| |  ||| |||||| || |  | ||||||||||||  |    
T  31826127 cggagcgttcaaatacacttatcaacgttcatcattcgctttccgcaatacgcacggatcgcaatcttacaccgtctattacatcaaatccaacgactga 31826028  T
Q  224 gagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactacc-attcataaatactcagatccgtttctctctttcccactc 318  Q
    ||  |||||||||| || |||| |||||||||||||||||||  |   |  | ||| ||||||||||||||||||||  |||||||||||||||||    
T  31826027 gatcaaaacacaaaattcagtt-ccctcttattcatcccgctctcacgctcccacccattcataaatactcagatccccttctctctttcccactc 31825933  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 21585090 - 21585022
Alignment:
Q  169 caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaa 237  Q
    ||||||||||||||||| |||||| ||||||||| |  | |||||||||||| || |  ||||||||||    
T  21585090 caatacgcacggatcgccaatttaaaccgtcgattacgtaaaatccaacgacccatatcaaaacacaaa 21585022  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 14261338 - 14261282
Alignment:
Q  395 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagag 451  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  14261338 gaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagag 14261282  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 39955150 - 39955092
Alignment:
Q  396 aaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggca 454  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggca 39955092  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 10575264 - 10575319
Alignment:
Q  396 aaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagag 451  Q
    |||||||| |||||||||||||||||||| ||| | |||||||| |||||||||||    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagag 10575319  T

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