View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_7 (Length: 447)
Name: NF17521_low_7
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 39997916 - 39998338
Alignment:
| Q |
8 |
tgagatgaatttaacaacatcttatatactaccatttttctagtgtcatcttaataatgcacatagcaaatcaattactttagaaaggagtatcatgtac |
107 |
Q |
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| T |
39997916 |
tgagatgaatttaacaacatcttatatactaccatttttctagtgtcatcttaataatgcacatagcaaatcaattactttagaaaggagtatcatgtac |
39998015 |
T |
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| Q |
108 |
taaagagaatgaccaatttccaggaatccaagagagacacttggacagtggaaatcgaatcttttgaaggccattgcttaaagtaaattttgcttaggag |
207 |
Q |
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| T |
39998016 |
taaagagaatgaccaatttccaggaatccaagagagacacttggacagtggaaatcgaatcttttgaaggccattgcttaaagtaaattttgcttaggag |
39998115 |
T |
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| Q |
208 |
ggccctcaatttccttgtaagtaataagtagagattattttgattggcttatagcaatgatgttccttttgttttaccattaatcatcttttgtatttcc |
307 |
Q |
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| T |
39998116 |
ggccctcaatttccttgtaagtaataagtagagattattttgattggcttatagcaatgatgttccttttgttttaccattaatcatcttttgtatttcc |
39998215 |
T |
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| Q |
308 |
aataaccatgggtcctttttatgtgattggcgtgattaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattacta |
407 |
Q |
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| T |
39998216 |
aataaccatgggtcctttttatgtgattggcgtgattaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattac-- |
39998313 |
T |
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| Q |
408 |
ataccattttgtcctatatagcaatt |
433 |
Q |
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| T |
39998314 |
-tatcattttgtcctatatagcaatt |
39998338 |
T |
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