View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17521_low_8 (Length: 431)
Name: NF17521_low_8
Description: NF17521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17521_low_8 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Original strand, 40718258 - 40718681
Alignment:
| Q |
8 |
gcagaacctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacag |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40718258 |
gcagaatctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacag |
40718357 |
T |
|
| Q |
108 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
40718358 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccacttctccgggtgt |
40718457 |
T |
|
| Q |
208 |
tgccatcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaa |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718458 |
tgccatcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaa |
40718557 |
T |
|
| Q |
308 |
tgattattgaaggctttgtttactttatcaaattcataatcaaaataatttgcattttatgtcttgtctctttaataacaaagttaattcacattaggtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718558 |
tgattattgaaggctttgtttactttatcaaattcataatcaaaataatttgcattttatgtcttgtctctttaataacaaagttaattcacattaggtt |
40718657 |
T |
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| Q |
408 |
ttgttcattactagtataatgatc |
431 |
Q |
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|||||||||||||||||||||||| |
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| T |
40718658 |
ttgttcattactagtataatgatc |
40718681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 14183716 - 14183844
Alignment:
| Q |
205 |
cgttgccatcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtg |
304 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
14183716 |
cgtttccatcttcggaaacttagctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtg |
14183815 |
T |
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| Q |
305 |
taatgattattgaaggctttgtttacttt |
333 |
Q |
| |
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||||| | ||| || ||||||||||||| |
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| T |
14183816 |
taatgggtgttgtagactttgtttacttt |
14183844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 14183510 - 14183683
Alignment:
| Q |
17 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
116 |
Q |
| |
|
|||||||| |||||||| |||||||||| | | ||| |||||||||||||| ||||||||| ||||| | |||||| ||||||| | ||||||| |
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| T |
14183510 |
gtgaaactgaagcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacatttta |
14183609 |
T |
|
| Q |
117 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgctttt |
190 |
Q |
| |
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||||||||||| ||||||||||||| |||||||| |||||| ||||| |||| ||||||||| |||||||| |
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| T |
14183610 |
aaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgtcttgctttt |
14183683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 14192467 - 14192748
Alignment:
| Q |
24 |
tagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgc |
123 |
Q |
| |
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|||| |||||||| ||||| |||||| ||||||||||||||||||| || | | || ||||| | |||||| |||| ||| ||||||||||||||| |
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| T |
14192467 |
tagaacgtgttgacgatcctactcaaacattaaacctttgctatagtgtcaaagctgagggatatgattttcctataatcacaatgcattttaaaggtgc |
14192566 |
T |
|
| Q |
124 |
ggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgttgccatcttcggaaac |
223 |
Q |
| |
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||| | | |||||||| ||||| || |||||||| ||||| |||| || ||||||| |||||| | |||| | |||||||| ||||| |
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| T |
14192567 |
agatgtcgatttgcatcctattagcacatttgtttcggttgctgatggtgttttttgcttggcttttgaatcatctcaagatcacgccatctttggaaat |
14192666 |
T |
|
| Q |
224 |
ttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgt |
305 |
Q |
| |
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|| ||||| || |||||| ||||||||||||| ||| | ||||||| |||||| ||||| |||| |||||||| |||||||| |
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| T |
14192667 |
ttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaagtgt |
14192748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 14201649 - 14201736
Alignment:
| Q |
209 |
gccatcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgta |
296 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||||||||||||| | ||| ||||| ||||| ||||||||||| |||||||| |
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| T |
14201649 |
gccatctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgta |
14201736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 19648985 - 19648692
Alignment:
| Q |
17 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
116 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||| |||||||||||| ||||||| |||||||||| |||| | |||||| |||| || || ||||||| |
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| T |
19648985 |
gtgaaactagatcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacatttta |
19648886 |
T |
|
| Q |
117 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgttgccatctt |
216 |
Q |
| |
|
||||||| |||||||||||| | || ||||||||||||| | ||||| |||| | |||||||| |||||||| | |||| | | | ||||| |
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|
| T |
19648885 |
aaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttgcttagcttttacatcatctcaaactggtccaatctt |
19648786 |
T |
|
| Q |
217 |
cggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaatga |
310 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||| ||| ||||||| | |||||| |||||||||| |||||||| ||| ||||||||| |
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|
| T |
19648785 |
tggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgtatcaaggtgtaatga |
19648692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 34666260 - 34666565
Alignment:
| Q |
17 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
116 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || || ||||||| |
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| T |
34666260 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacatttta |
34666359 |
T |
|
| Q |
117 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgttg---ccat |
213 |
Q |
| |
|
||||||| |||||| |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| | ||||| ||| |||| |
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|
| T |
34666360 |
aaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgctttccaaccatctcctcaacttggttccat |
34666459 |
T |
|
| Q |
214 |
cttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaatgatta |
313 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||||| | |
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| T |
34666460 |
ctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaagtgtaatgagtg |
34666559 |
T |
|
| Q |
314 |
ttgaag |
319 |
Q |
| |
|
|||||| |
|
|
| T |
34666560 |
ttgaag |
34666565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 34646566 - 34646871
Alignment:
| Q |
17 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcatttta |
116 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || | ||||||| |
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|
| T |
34646566 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacatttta |
34646665 |
T |
|
| Q |
117 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgttg---ccat |
213 |
Q |
| |
|
||||||| ||| || |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| | ||||| ||| |||| |
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|
| T |
34646666 |
aaggtgccgatgttgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgctttccaaccatctcctcaacttggttccat |
34646765 |
T |
|
| Q |
214 |
cttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaatgatta |
313 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||||||||| || ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||||| | |
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|
| T |
34646766 |
ctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaagtgtaatgagtg |
34646865 |
T |
|
| Q |
314 |
ttgaag |
319 |
Q |
| |
|
|||||| |
|
|
| T |
34646866 |
ttgaag |
34646871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 45645951 - 45646046
Alignment:
| Q |
212 |
atcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaagtgtaa |
307 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||||| ||| ||| ||||| ||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
45645951 |
atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaagtgtaa |
45646046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 45645837 - 45645899
Alignment:
| Q |
92 |
tttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccattagtaccttt |
154 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||| || |||||||| | |||||||||||| |
|
|
| T |
45645837 |
tttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 34303427 - 34303502
Alignment:
| Q |
208 |
tgccatcttcggaaacttagctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaag |
283 |
Q |
| |
|
||||||||| |||| ||| ||||||| |||| ||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
34303427 |
tgccatctttggaagcttttctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaag |
34303502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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