View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_high_1 (Length: 307)
Name: NF17522_high_1
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 44903724 - 44903466
Alignment:
| Q |
13 |
aattcaatgttttgtatctcacttttgatacaccagatcattcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcag |
112 |
Q |
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| T |
44903724 |
aattcaatgttttgtatctcacttttgatacaccagatcattcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcag |
44903625 |
T |
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| Q |
113 |
agtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903624 |
agtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgta |
44903525 |
T |
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| Q |
213 |
aaacttcagcttgaattcccgaatcattcaacaaagttactatgaatgatgaagcaaag |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44903524 |
aaacttcagcttgaattcccaaatcattcaacaaagttactatgaatgatgaagcaaag |
44903466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 44917196 - 44916938
Alignment:
| Q |
13 |
aattcaatgttttgtatctcacttttgatacaccagatcattcaggtagtttgagtgtgcaagcaatcaaagttgctcatgaggaaagagaagaattcag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44917196 |
aattcaatgttttgtatctcacttttgatacaccagatcattcaggtagcttgagtgtgcaagcaatcaaagttgctcataaggaaagagaagaattcag |
44917097 |
T |
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| Q |
113 |
agtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44917096 |
agtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaacagacaagtgatgaagctataacttatcatgta |
44916997 |
T |
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| Q |
213 |
aaacttcagcttgaattcccgaatcattcaacaaagttactatgaatgatgaagcaaag |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44916996 |
aaacttcagcttgaattcccaaatcattcaacaaagttactatgaatgatgaagcaaag |
44916938 |
T |
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