View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17522_high_12 (Length: 351)
Name: NF17522_high_12
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_12 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 37865 - 37526
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37865 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacacca |
37766 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37765 |
ttggaaaaaacctagatctcttgtctttagagtcaaggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
37666 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
37665 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaatattggtcactaccagacttcagattgttgca |
37566 |
T |
|
| Q |
311 |
tccatcatgggaactaaggttcatcctttagcacagttat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565 |
tccatcatgggaactaaggttcatcctttagcacagttat |
37526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 16658387 - 16658048
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
16658387 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttactgaaaattttagagtccatcatagaaaacacca |
16658288 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658287 |
ttggaaaaaacctagatctcttgtctttagagtcaaggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
16658188 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658187 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
16658088 |
T |
|
| Q |
311 |
tccatcatgggaactaaggttcatcctttagcacagttat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658087 |
tccatcatgggaactaaggttcatcctttagcacagttat |
16658048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 16867788 - 16868125
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16867788 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgt--ttcggacgatttcagtttgatgaaaattttagagtccatcacagaaaacacca |
16867885 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16867886 |
ttggaaaaaatctagatctcttgtctttagaaaccttgagaaaaaaggttcaagaaattttgcaaaacaaaaagtatttgcttgttcttgatgatgtttg |
16867985 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867986 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
16868085 |
T |
|
| Q |
311 |
tccatcatgggaactaaggttcatcctttagcacagttat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868086 |
tccatcatgggaactaaggttcatcctttagcacagttat |
16868125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 16838056 - 16837716
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16838056 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacacca |
16837957 |
T |
|
| Q |
111 |
ttggaaaaaac-ctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgttt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16837956 |
ttggaaaaaaatctagatctcttgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgt |
16837857 |
T |
|
| Q |
210 |
ggagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgc |
309 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837856 |
ggagtgatgaccaagtgaaatggaatacgttcaagtctttgttgccaaatggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgc |
16837757 |
T |
|
| Q |
310 |
atccatcatgggaactaaggttcatcctttagcacagttat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837756 |
atccatcatgggaactaaggttcatcctttagcacagttat |
16837716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 17069884 - 17069570
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17069884 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacacca |
17069785 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
17069784 |
ttggaaaaaatctagatctcttgtctttagagtcaaggcaaaaaaaggttcaagaaattttgcaaagcaaaaggtatttgcttgttcttgatgatgtgtg |
17069685 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|||||| ||||||| ||||||||||| || ||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
17069684 |
gagtgatgaccaagtgaaatggaatagcttcaagtctttgttaccaaatggaaagaaaggtgcatcaattttagtcactaccagacttgacattgttgca |
17069585 |
T |
|
| Q |
311 |
tccatcatgggaact |
325 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17069584 |
tccatcatgggaact |
17069570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 16797544 - 16797205
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
16797544 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtctatcatagaaaacacca |
16797445 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
16797444 |
ttggaaaaaatctagaactcttgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaaccaaaggtatttgcttgttcttgatgatgtgtg |
16797345 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16797344 |
gagtgatgaccaagtgaaatggaatacgttcaagtcattgttgccaaatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgca |
16797245 |
T |
|
| Q |
311 |
tccatcatgggaactaaggttcatcctttagcacagttat |
350 |
Q |
| |
|
||||||||||||||| | ||||||| |||| ||| ||||| |
|
|
| T |
16797244 |
tccatcatgggaacttatgttcatcatttaacacggttat |
16797205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 16987832 - 16987518
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||| | |||||||| | |
|
|
| T |
16987832 |
gatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaagttttagagtcgatcattgaaaacacta |
16987733 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| | | |||||| |||||||||||||| | |||||||| ||| | ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
16987732 |
ttggaaaaaatccacatctctcgtctttagagtcaatgcaaaaaaatgttcaagaaattctacaaaacaaaaggtatttacttgttcttgatgatgtgtg |
16987633 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||| |||||||| | ||| ||||||||||||| |||||||||| ||||||||||| | ||||||| |
|
|
| T |
16987632 |
gactgaagaccgagagaaatggaataagttcaagtctgtgttgcaaaatagaacgaaaggtgcatcagttttggtcaccaccagacttgacaatgttgca |
16987533 |
T |
|
| Q |
311 |
tccatcatgggaact |
325 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16987532 |
tccatcatgggaact |
16987518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 18872967 - 18873287
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| ||||| |||| |
|
|
| T |
18872967 |
gatgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccaccg |
18873066 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
||||||||| | |||||||| ||||||||| |||| | |||| || ||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
18873067 |
atggaaaaaatccagatctctcgtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaacaaaaggtatctacttgttcttgatgatgtgtg |
18873166 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
18873167 |
gaatgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacatt |
18873266 |
T |
|
| Q |
305 |
gttgcatccatcatgggaact |
325 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
18873267 |
gttgcatcaatcatgggaact |
18873287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 16788342 - 16788031
Alignment:
| Q |
12 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccat |
111 |
Q |
| |
|
||||||| |||| || ||||||||| ||||||||||| | | |||||| ||||||||||| ||||||| |||||||| || || ||||| |||| || |
|
|
| T |
16788342 |
atgaaagagtaagaaaccattttgacctgaaaatatggatttttgtttcagatgatttcagcatgatgaaggttttagag-ccgtcatagaagacacaat |
16788244 |
T |
|
| Q |
112 |
tggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttgg |
211 |
Q |
| |
|
||||||||| | |||||||| ||||| ||||||| | ||||||||| ||||| ||||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
16788243 |
tggaaaaaatccagatctctcatctttggagtcaatgcgaaagaaggttcaagaaatttt-caaaacaaaaggtatctacttgttcttgatgatgtgtgg |
16788145 |
T |
|
| Q |
212 |
agtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcat |
311 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
16788144 |
aatgaagaccaagagaaatggaataagttcaagtctttgttgcaatatgaaacgaaaggtgcatcaattttggtcactgcacgacttgacattgttgcat |
16788045 |
T |
|
| Q |
312 |
ccatcatgggaact |
325 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
16788044 |
ccatcatggcaact |
16788031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 18805973 - 18806293
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| ||| |||||||| |||| |||||||| ||||| | || |
|
|
| T |
18805973 |
gatgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccgccg |
18806072 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
||||||||| | |||||||| ||||||||| |||| | |||||| | ||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
18806073 |
ttggaaaaagtccagatctctcgtctttagaatcaatgcaaaaggaagttcaaaaaattttgcaaaacaaaaggtatctacttgttcttgatgatgtgtg |
18806172 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||| ||| |||||| |||||| |||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
18806173 |
gaatgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcaattttggtcacaaccagacttgacatt |
18806272 |
T |
|
| Q |
305 |
gttgcatccatcatgggaact |
325 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
18806273 |
gttgcatcaatcatgggaact |
18806293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 16844065 - 16843925
Alignment:
| Q |
157 |
ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgcaa |
256 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||| | |||||| ||||||| | |||||| |||||| |
|
|
| T |
16844065 |
ggttcaaactattttgcaaaacaaaaggtatttacttgtccttgacgatgtttggaatgaagaccaacataaatgggataagttcatgtcttttttgcaa |
16843966 |
T |
|
| Q |
257 |
cttggaaa------gaaaggtgcatcaattttggtcactac |
291 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |
|
|
| T |
16843965 |
tgtggaaatggaacaaaaggtgcatcagttttggtcactac |
16843925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 16781483 - 16781422
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag |
72 |
Q |
| |
|
|||||||| |||| || |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16781483 |
gatgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcag |
16781422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 16781223 - 16781163
Alignment:
| Q |
265 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
325 |
Q |
| |
|
||||||| |||| ||||| ||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
16781223 |
gaaaggttcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaact |
16781163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 16844211 - 16844119
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaa |
103 |
Q |
| |
|
||||| |||||||| || |||||| |||||||||||||| |||||||| |||||||| ||| ||||||| ||||| |||| ||| ||||| |
|
|
| T |
16844211 |
gatgagagggtaaatactcattttcctttgaaaatatgggtttgtgtttctgatgattttagtatgatgaagattttgcagtcgatcgtagaa |
16844119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 13227 - 12913
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
13227 |
gatgaaagtgtaaagacacattttgacttgaaaatatgggtgtgtgtttctgatgatttcagtatgatgaaggttttagagtccatcatagaagacacca |
13128 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| | | |||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13127 |
ttggaaaaaatccaaatctctcctctttagagtcaatgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgtgtg |
13028 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13027 |
gagtgaagaccaagagaaatggaataagttcaagtcttcgttgcaacatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgca |
12928 |
T |
|
| Q |
311 |
tccatcatgggaact |
325 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12927 |
tccatcatgggaact |
12913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 8885 - 8571
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| | ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
8885 |
gatgaaagggtaaagacacattttgacttgaaaatatgggtgtgtgtttctggtgatatcaatgcgatgaaagttttagagtccatcatagaaaacacca |
8786 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
|||||||||| | | |||||| |||||||||||||| | ||||||||| ||||||||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
8785 |
ttggaaaaaatccacatctctcgtctttagagtcaatgcaacaaaaggttcaagaaattttgcaaaaaaataggtatttacttgttcttgatgatgtgtg |
8686 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgca |
310 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8685 |
gactgaagacaaagagaaatggaataagttaaagtctttgttgctaaatggaaagaaaggtgcatcaattttgatcactaccagacttgacattgttgca |
8586 |
T |
|
| Q |
311 |
tccatcatgggaact |
325 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8585 |
tccatcatgggaact |
8571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 5054 - 4737
Alignment:
| Q |
14 |
gaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacaccattg |
113 |
Q |
| |
|
||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| ||||| |||| || |
|
|
| T |
5054 |
gaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatg |
4955 |
T |
|
| Q |
114 |
gaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggag |
213 |
Q |
| |
|
||||||| | |||||||| ||||||||| |||| | |||| || ||||||||||||||||||| ||| | ||||||||||||||||| |||| |
|
|
| T |
4954 |
gaaaaaatccagatctctcgtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaacaaaagatatctacttgttcttgatgatgtgtggaa |
4855 |
T |
|
| Q |
214 |
tgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagattgtt |
307 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
4854 |
tgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacattgtt |
4755 |
T |
|
| Q |
308 |
gcatccatcatgggaact |
325 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
4754 |
gcatcaatcatgggaact |
4737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 9737 - 9417
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcctagaaaacacca |
110 |
Q |
| |
|
|||||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| | | |||||||| |||| |||||||| ||||| |||| |
|
|
| T |
9737 |
gatgaaagggtagatacacactttaacttgaaaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccg |
9638 |
T |
|
| Q |
111 |
ttggaaaaaacctagatctcttgtctttagagtcaaggnnnnnnnnggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttg |
210 |
Q |
| |
|
||||||||| | |||||||| ||||||||| |||| | |||| || ||||||||||||| ||||| ||| | ||||||||||||||||| || |
|
|
| T |
9637 |
atggaaaaaatccagatctctcgtctttagaatcaatgcaaaagaaggttaaaaatattttgcaaaataaaagatatctacttgttcttgatgatgtgtg |
9538 |
T |
|
| Q |
211 |
gagtgaagaccaagagaaatggaataagttaaagtctttgttgcaacttggaaa------gaaaggtgcatcaattttggtcactaccagacttgagatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||| ||| |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
9537 |
gattgaagaccaagagaaatggaatcagttcaagtattttctgcaacgtggaaatggcacgaaaggtgcatcagttttggtcacaaccagacttgacatt |
9438 |
T |
|
| Q |
305 |
gttgcatccatcatgggaact |
325 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
9437 |
gttgcatcaatcatgggaact |
9417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 325
Target Start/End: Complemental strand, 13378328 - 13378155
Alignment:
| Q |
158 |
gttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgcaac |
257 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||| || |||||||| |||| ||||||||| | |||||| | ||||| |||| |||||||||| |
|
|
| T |
13378328 |
gttcaagaagttttgcaaagcaaaaggtatttacttgtactagatgatgtgtggaatgaagaccatgttaaatgggaaaagttcaagtttttgttgcaat |
13378229 |
T |
|
| Q |
258 |
ttgg------aaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
325 |
Q |
| |
|
||| || |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13378228 |
gtggcattacaaggaaaggatcatcaattttagtcactacgcgacttgagattgttgcatccatcatgggaact |
13378155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 13378454 - 13378402
Alignment:
| Q |
32 |
tttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
84 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||| ||| |||||| |
|
|
| T |
13378454 |
tttgacttgaaaatatgggtttgtgtttctgatgatttcagtatgaagaaaat |
13378402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 7053189 - 7053363
Alignment:
| Q |
157 |
ggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttgca- |
255 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||| | ||||||||||||| ||||||||| | |||||| | ||||| |||| ||||||||| |
|
|
| T |
7053189 |
ggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgtttggaatgaagaccatggtaaatggtacaagttcaagtttttgttgcag |
7053288 |
T |
|
| Q |
256 |
-----acttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
325 |
Q |
| |
|
| || || ||||||| |||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
7053289 |
tctgcaattacaaggaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaact |
7053363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 7053043 - 7053104
Alignment:
| Q |
11 |
gatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcag |
72 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
7053043 |
gatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcag |
7053104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38939137 - 38939209
Alignment:
| Q |
12 |
atgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
84 |
Q |
| |
|
||||||| |||| || |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
38939137 |
atgaaagcgtaaccacccattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
38939209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 38939396 - 38939456
Alignment:
| Q |
265 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
325 |
Q |
| |
|
|||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38939396 |
gaaaggggcatctattttagtcacaacacgacttgagattgttgcatccatcatgggaact |
38939456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 9268 - 9208
Alignment:
| Q |
265 |
gaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaact |
325 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
9268 |
gaaaggtgcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaact |
9208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 9510 - 9455
Alignment:
| Q |
29 |
cattttgacttgaaaatatgggtgtgtgtttcggatgatttcagtttgatgaaaat |
84 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
9510 |
cattttgatttgaaaatatgggtttgtgtttcagatgatttcagcatgatgaaaat |
9455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 15331922 - 15331854
Alignment:
| Q |
185 |
tatttgcttgttcttgatgatgtttggagtgaagaccaagagaaatggaataagttaaagtctttgttg |
253 |
Q |
| |
|
|||||||||||| | |||||||| |||| |||| | |||||||||||| | ||||| || ||||||||| |
|
|
| T |
15331922 |
tatttgcttgttttagatgatgtgtggaatgaaaaacaagagaaatggcacaagttgaaatctttgttg |
15331854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University