View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_high_18 (Length: 326)
Name: NF17522_high_18
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38816654 - 38816331
Alignment:
| Q |
1 |
tcatagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatggg |
100 |
Q |
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| T |
38816654 |
tcatagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatggg |
38816555 |
T |
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| Q |
101 |
agatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaa |
200 |
Q |
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| T |
38816554 |
agatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaa |
38816455 |
T |
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| Q |
201 |
agatgaaggaggaatgcttgggtgggtgagaaagggacaaatggcatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtcta |
300 |
Q |
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| T |
38816454 |
agatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtcta |
38816355 |
T |
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| Q |
301 |
gattttgcagttggctactttttg |
324 |
Q |
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| T |
38816354 |
gattttgcagttggctactttttg |
38816331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
138 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
237 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
238 |
caaatggcatgctgttgtttaggtttaattaaaccttgttcttagggttt |
287 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
29 |
tgttggagactgacatctgttggacactggacacacctt |
67 |
Q |
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| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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