View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17522_high_1_N (Length: 430)
Name: NF17522_high_1_N
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_1_N |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 32 - 401
Target Start/End: Original strand, 32062504 - 32062873
Alignment:
| Q |
32 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
|
| Q |
132 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
|
| Q |
232 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaa |
32062803 |
T |
|
| Q |
332 |
gtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062804 |
gtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
32062873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University