View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17522_high_22 (Length: 310)
Name: NF17522_high_22
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 1045813 - 1045544
Alignment:
| Q |
4 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagccacacacacagaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1045813 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcag--tcacacacagaat |
1045716 |
T |
|
| Q |
104 |
gtttgccaaaaataacaaataacaagataaattggaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaatagatt |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1045715 |
gtttgccaaaaataacagataacaagataaattgaaaaaattaggagc-------------acaatgagttatttattatacttgttaatcgaatagatt |
1045629 |
T |
|
| Q |
204 |
caaacagtgaagaaaagatcgtaccgtatagtgagagggtttcgttataattgaattgttttcgcgaagggtagaagctttgatg |
288 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
1045628 |
caaacagtgaagaaaagatcgtaccttatagtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgatg |
1045544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 1039345 - 1039303
Alignment:
| Q |
197 |
atagattcaaacagtgaagaaaagatcgtaccgtatagtgaga |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1039345 |
atagattcaaacagtgaagaaaagaacgtaccgtatcgtgaga |
1039303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University