View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_high_25 (Length: 304)
Name: NF17522_high_25
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 8188417 - 8188115
Alignment:
| Q |
2 |
tcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcat |
101 |
Q |
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| T |
8188417 |
tcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcat |
8188318 |
T |
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| Q |
102 |
catcgacattttgaacatcatcttcatcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacg |
201 |
Q |
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| T |
8188317 |
catcgacattttgaacatcatcttcatcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacg |
8188218 |
T |
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| Q |
202 |
catacaaatagcatcctcagtatctatgtctatcactgggctttggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccacta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188217 |
catacaaatagcatcctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccacta |
8188118 |
T |
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| Q |
302 |
atc |
304 |
Q |
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||| |
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| T |
8188117 |
atc |
8188115 |
T |
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